Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 564 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 563 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 559 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 557 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 529 / 0 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22370 528 / 0 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT5G59590 267 / 3e-84 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G11340 263 / 7e-83 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 260 / 1e-81 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 255 / 1e-79 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024583 [exp] 743 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 742 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 686 / 0 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 590 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 572 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 566 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10013925 [exp] 550 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 541 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 540 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098300 [exp] 669 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 627 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 615 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 614 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 590 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 586 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 584 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 584 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 570 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 569 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10032218 pacid=23168472 polypeptide=Lus10032218 locus=Lus10032218.g ID=Lus10032218.BGIv1.0 annot-version=v1.0 ATGGCAACTAACAGCTCCAAAAATGGGCAACTAGCTCCACATGCAATATGCTTACCATTCCCAGGACAAGGCCACATCAACCCAATGCTCAAGCTAGCCA AACTCCTTCACCACAAGGGATTCCACATCACCTTCGTCAACACCGAGTTCAGCCACCGTCGACTCCTCCAATCTCGAGCCTCGTCGTTCGAGAACCTCCC GGGTCGCTTCCGGTTCGAGACCATCCCAGACGGGCTCCCTCCCTCCTTCGACGAGGATGCGACGACCCAAGACGTGCCCTCGGTATGCGACTCCACCAAG AGGACTTGCTCCGGTCCCTTTAAACGGCTCGTTTCGAAGCTAAACGATGCCGCATCGTCAGTCGTACCGCCGGTTACTTGCATAGTTTCTGATTGCATGA TGGGGTTCACTATGCAAGTGGCTAAGGAGCTTGGGATCCCTAATGTGATGTTGTCGACGGCTAGTGCTTGTGGGTTCATTGGTTACCTCAATTACCGCAA ACTTCTTCAAAAGGGCATTGTGCCCCTCAAAGATGCAAGCTACCTAACAAATGGATATTTGGAGACTCGTATCGATTGGATACCTGGTATGGAAGGCATT CCGTTGAAGTACATGCCAAGCTTTGTACGCACAACAGATCCAGAAGAGTTTATGTTCAATTTCGCCATGGAAGAAGTTGAAAATACTCAAAATGCCTCAG CACTCATAATCAACACGTTCGATAAACTCGAACGCAAATTCGTCGAATCGGTCCTCCCGACCTTCCCTCCGATCTACACGATCGGTCCTCTTCATCTTAT GGACACCCGAGAAAGTGCCCTCGACTCTCTCGGGTTGAACCTATGGAAAGAAGAACACGGTTGCCTCGAATGGCTCGACCGGAACGAACCAAACTCGGTT GTGTACATCAATTTCGGAAGCGTAACGGTCATGACATCTCATCAATTGGTCGAGTTCGCATGGGGGCTAGCACATAGTGGCAAACCCTTTTTGTGGGTGA TCAGGTCTGACCTTGTTAAGGGCGAGTCCGCGATTCTTCCTCGCGAGTTTAGTGAGGAGATCAAAGAAAGGGGACTACTTGTGAGTTGGTGTCCGCAAGA GAAGGTCCTAAAACACGCGTCGATTGGAGGGTTTCTGACACACTGCGGGTGGAACTCGACGCTCGAGAGCCTGACAAATGGAGTGCCGATGATTTGTTGG CCGTTTTTCGCGGAGCAGCACACGAATTGTTGGTTCGTTTGTGAGAAATTGGGGGTCGGTCTTGAAATCGACAATGATATCAAGAGGGAGGAGATTGATG AGCTTGTTAGGGAGTTGATGGATGGAGAGAAAGGGAAAGAGATGAAACGAAGGGCAATGGAGTGGAAGAAATCGGCCGAGGATGCGACACTTGGCGAGAG CGGATTGGCTTACTTGAATTTGGAAGACATGATCAATAATATACTTCTCCACAACGTTAAAAAGAATTAA
AA sequence Show only first row Show all	>Lus10032218 pacid=23168472 polypeptide=Lus10032218 locus=Lus10032218.g ID=Lus10032218.BGIv1.0 annot-version=v1.0 MATNSSKNGQLAPHAICLPFPGQGHINPMLKLAKLLHHKGFHITFVNTEFSHRRLLQSRASSFENLPGRFRFETIPDGLPPSFDEDATTQDVPSVCDSTK RTCSGPFKRLVSKLNDAASSVVPPVTCIVSDCMMGFTMQVAKELGIPNVMLSTASACGFIGYLNYRKLLQKGIVPLKDASYLTNGYLETRIDWIPGMEGI PLKYMPSFVRTTDPEEFMFNFAMEEVENTQNASALIINTFDKLERKFVESVLPTFPPIYTIGPLHLMDTRESALDSLGLNLWKEEHGCLEWLDRNEPNSV VYINFGSVTVMTSHQLVEFAWGLAHSGKPFLWVIRSDLVKGESAILPREFSEEIKERGLLVSWCPQEKVLKHASIGGFLTHCGWNSTLESLTNGVPMICW PFFAEQHTNCWFVCEKLGVGLEIDNDIKREEIDELVRELMDGEKGKEMKRRAMEWKKSAEDATLGESGLAYLNLEDMINNILLHNVKKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	4.0	0.8896
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	5.7	0.8847
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	6.5	0.8890
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	6.5	0.8314
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	6.9	0.8686
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	9.7	0.8335
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	13.9	0.8476
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	15.9	0.8494
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	16.1	0.8579
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	16.2	0.8541

Compare expression of checked genes

Lus10032218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.