Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12330 484 / 1e-167 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12300 480 / 2e-166 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 479 / 9e-166 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT5G44620 474 / 6e-164 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12310 457 / 3e-157 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G22690 433 / 2e-147 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 429 / 5e-146 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT2G45550 261 / 3e-81 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 261 / 6e-81 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 258 / 5e-80 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 762 / 0 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024585 [exp] 374 / 2e-128 AT4G12300 339 / 5e-115 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024586 [exp] 359 / 7e-123 AT4G12320 280 / 4e-92 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032026 [exp] 363 / 1e-120 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 357 / 6e-118 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032215 [exp] 354 / 2e-116 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10004331 [exp] 353 / 2e-116 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 349 / 3e-115 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 345 / 3e-113 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118500 [exp] 568 / 0 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 527 / 0 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 388 / 9e-130 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 371 / 1e-123 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 308 / 2e-99 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 279 / 6e-88 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G025800 [exp] 274 / 6e-86 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 273 / 9e-86 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G150200 [exp] 264 / 2e-82 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 263 / 5e-82 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032222 pacid=23168636 polypeptide=Lus10032222 locus=Lus10032222.g ID=Lus10032222.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGATCCTCATCTTCGCCGTCGCCGGAATCACCCTCATCTTCCTCTTCACGCGCCGCATCAAAAACTGCCCCAACCCACCCCTCCCGCCGG GCCCACGCGCCTTACCCATCATCGGAAACCTCGCCTCATTACCCCCGGAGCTCCACTCCTACTTCGAATCCTTAGCCCGGAAACACGGCCCGATCCTCCG CCTCCGATTGGGCCAGAAGCTCGCCATCGTGATCTCCTCCCCTGCTTTAGCCCGCGAGATTTTGATGGACCAGGACGTGGCCTTCGCCAACCACGATGCC GGGGACGTCGCACGCGCTGCCACGTACGGAGGCATCGACCTCCTGTCTACCCCCTACGGCGCCGAGTGGCGGATGTTGAGGAAAGTGTGTGTGCTGAAGA TGCTGAGCAAATCGACTCTGGATTCCGTCTATGGGCTCCGCCGCCGTGAGCTCCGCCGAACGGTCGGGTTCATGGCGGGCCGGGCAGGGTCGGAGGTGGA CTTTGGGGAGCAGATGTTTTTTACAGTGATGAATGTTGTGACGAGCATGATATGGGGAGGGACGGTCGGGGTAGGGGAAGAGAGGGAGAAGCTCGGGGCA GAGTTCCGACGGTTGGTTTCGGAGATCGTCCAGCTTTTGGGGTCGCCGAATCTGTCGGATTATTTCCCCGCTTTATCCCGGTTTGATTTGCAAGGACTAA GAAAAAAGGTGAACATCGCGGCGATGAGCTTTGATGAGATTTTTGAGGAGGTTATTTCGAAAAGGTTGAATATGGAGGACGGGTCGACCGATTTATTGGA GTATCTACTGAAGCTAGTGAAGGAAGAAGGCGGAGATGCCAAGACTCGTTTCACAGTGAGCCATCTCAAAGCTCTCCTCATGAATATAATAGTGGGAGGC ACAGACTCATCAGCAAACTCAATCGAGTTCGCGATGGCAGAAGTGCTCAACAACCCACAAGTCCTCGAAAGGGCACAACAAGAGCTAGACCAAGTGGTAG GGAAAGAGAACATAGTTGAAGAGTCACACATCCACAAGCTCCCTTACTTGAATTGCATCATGAAGGAGTCACTAAGGCTCCACCCGCCAGTCCCTTTACT TGTTCCGCACTGCAACCCTAACCAAGACTGCACGGTGGGAGGCTACACCATCCCTAAGGGCTCACAAGTGTTTGTGAACGTGTGGTCCATCCACCGGGAC CCATCAGTGTGGGAGGACGACCCTCTGGTGTTCAAGCCGGAGAGGTTCATGGATTCGAGCTTTGACTACAACGGCAACGATCTGACTTACTTCCCTTTCG GGTCCGGCAGGAGGATTTGTGTTGGGATAGCGATGGCAGAGAGGATGTTCTTGTTGTCGCTTGCTACATTCTTGTACTCGTTCGACTGGAAGCTGCCTCA GGGGAAGAAGAGCATCGACCTAACGGAGAAATTCGGGATGGTACTGAAGTTGAAGTCGCCTCTGGTTGTGGTTCCAGTGCCAAGGCTACCGAATTCGTCA CAGTACGAGTAG
AA sequence Show only first row Show all	>Lus10032222 pacid=23168636 polypeptide=Lus10032222 locus=Lus10032222.g ID=Lus10032222.BGIv1.0 annot-version=v1.0 MSPAILIFAVAGITLIFLFTRRIKNCPNPPLPPGPRALPIIGNLASLPPELHSYFESLARKHGPILRLRLGQKLAIVISSPALAREILMDQDVAFANHDA GDVARAATYGGIDLLSTPYGAEWRMLRKVCVLKMLSKSTLDSVYGLRRRELRRTVGFMAGRAGSEVDFGEQMFFTVMNVVTSMIWGGTVGVGEEREKLGA EFRRLVSEIVQLLGSPNLSDYFPALSRFDLQGLRKKVNIAAMSFDEIFEEVISKRLNMEDGSTDLLEYLLKLVKEEGGDAKTRFTVSHLKALLMNIIVGG TDSSANSIEFAMAEVLNNPQVLERAQQELDQVVGKENIVEESHIHKLPYLNCIMKESLRLHPPVPLLVPHCNPNQDCTVGGYTIPKGSQVFVNVWSIHRD PSVWEDDPLVFKPERFMDSSFDYNGNDLTYFPFGSGRRICVGIAMAERMFLLSLATFLYSFDWKLPQGKKSIDLTEKFGMVLKLKSPLVVVPVPRLPNSS QYE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032222 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10041109 [exp]	1.4	0.9184
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10038891 [exp]	2.0	0.8873
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	29.0	0.8869
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10032242 [exp]	32.4	0.8225
					Lus10042799 [exp]	34.5	0.8822
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	52.8	0.8716
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	89.7	0.8393
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	174.2	0.8660
AT4G14090			UDP-Glycosyltransferase superf...		Lus10040591 [exp]	203.4	0.8546
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10038687 [exp]	212.4	0.8372

Compare expression of checked genes

Lus10032222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.