Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 575 / 0 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 571 / 0 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 566 / 0 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 549 / 0 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 545 / 0 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22690 538 / 0 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 531 / 0 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT2G45550 310 / 8e-100 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 307 / 9e-99 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 307 / 1e-98 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032222 [exp] 809 / 0 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024585 [exp] 473 / 2e-167 AT4G12300 339 / 5e-115 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 442 / 3e-151 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 434 / 6e-148 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 427 / 3e-145 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024578 [exp] 426 / 9e-145 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 423 / 1e-143 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 421 / 5e-143 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 419 / 2e-142 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118500 [exp] 677 / 0 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 632 / 0 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 466 / 2e-160 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 451 / 9e-155 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 353 / 1e-116 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 332 / 2e-108 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G085000 [exp] 313 / 1e-100 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 311 / 3e-100 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 310 / 6e-100 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.007G084700 [exp] 308 / 1e-99 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032223 pacid=23168493 polypeptide=Lus10032223 locus=Lus10032223.g ID=Lus10032223.BGIv1.0 annot-version=v1.0 ATGCCGCCGGCGATACTCATCTTAGCCGCCGTCAGCATAATCTCCGTCATCTTCCTCTTCACGCGCCGCTTAAGAAACTCCCCCAACCCACCACTCCCGC CGGGCCCACGAGCCTTACCCGTCATCGGGAACCTAGCCTCCTTATCCCCGGAGCTCCACTCCTACTTCGGATCATTAGCTCGAGTACACGGCCCGATCCT CCGCCTCCAACTGGGTCAGAAGCTCGGCATCGTGATCTCCTCCCCTGCCTTAGCCCGTGAGATTCTAAAGGATCAAGATGTCGCCTTTGCCAACCGCGAC GTTCCGGACGTCGCACGCGCCGTCGCGTACGGTGGCAACGACATAGTGTGGACCCCATACGGTGCCGAGTGGCGGATGTTGAGGAAAGTGTGCGTGTTGA AGATGCTGAGCAATTCGACTCTGGATTCGGTTTATGGGCTCCGCCGCCGCGAGCTGCGGCGGACGGTCGGGTTCATGGCGAGCCGGGCCGGGTCGGAGGT TGATTTCGGGGAGCAGATGTTTCTGACGGTCATGAATGTTGTGACGAGCATGATGTGGGGTGGGACTGTCGGGGAAGGGGAAGAGAGGGAGAAGCTTGGC GCGGAGTTCCGGAGGTTGGTTTCCGAGATAACTGAGCTTTTGGGGTCGCCGAATCTGTCAGACTTTTTTCCGGCACTGTCCCGGTTCGATTTGCAGGGAC TGAGTAAGAAGGTGTATGCCGCGGGGATGAGCTTCGATGCGATTTTCGAGGAAGTGATTTCGAAAAGGTTGAAGATGGAAGAAGGATCGATCGATTTCTT GGAGTTTCTGTTGAAGCTAGTGAAGGAAGAAGGTGGAGATGCCAAGACTCCCCTCACCATGACCCATCTCAAAGCTCTCCTCATGGACATGATCGTGGGA GGCACAGACACATCGGCAAACTCAATCGAGTTCGCAATGGCAGAAGTCCTCAACAACCCAGAAGTCCTCAAGAGGGCACAAGAAGAGCTAGACCAAGTAG TGGGGAAAGAGAACATAGTTGAAGAGTCGCACATCCACAAGCTCCCTTACTTGAATTGCATCATGAAGGAGTCACTAAGGCTCCACCCGGCACTCCCTTT GCTCGTCCCGCACTGCAACCCTAGCCAGGACTGCGTCGTGGGAGGCTACACCGTACCCAAGGGATCACGGATCTTCGTGAACGTGTGGTCCATCCACAGA GACCCTTCAGTGTGGAAGGACGATCCGTCGGAGTTCAAACCAGAGAGGTTTGTGGATTCTAGCTTTGACTACAGTGGGAACGACTTGACTTACTTCCCGT TCGGGTCCGGTAGGAGGATATGCGCCGGGATAGCAATGGCGGAGAGGATGTTTTTGTTCTCGCTTGCTACGTTCTTGCACTCGTTCAACTGGAAGCTGCC TCAGGGAAAGAAGAACGTGGATCTGGCGGAGAAGTTTGGGATCGTGCTGAAGCTGAAGTCGCCTCTTATTGCGGTTCCGGTGCCAAGGCTACCGAATTCG TCACAGTACGAGTAG
AA sequence Show only first row Show all	>Lus10032223 pacid=23168493 polypeptide=Lus10032223 locus=Lus10032223.g ID=Lus10032223.BGIv1.0 annot-version=v1.0 MPPAILILAAVSIISVIFLFTRRLRNSPNPPLPPGPRALPVIGNLASLSPELHSYFGSLARVHGPILRLQLGQKLGIVISSPALAREILKDQDVAFANRD VPDVARAVAYGGNDIVWTPYGAEWRMLRKVCVLKMLSNSTLDSVYGLRRRELRRTVGFMASRAGSEVDFGEQMFLTVMNVVTSMMWGGTVGEGEEREKLG AEFRRLVSEITELLGSPNLSDFFPALSRFDLQGLSKKVYAAGMSFDAIFEEVISKRLKMEEGSIDFLEFLLKLVKEEGGDAKTPLTMTHLKALLMDMIVG GTDTSANSIEFAMAEVLNNPEVLKRAQEELDQVVGKENIVEESHIHKLPYLNCIMKESLRLHPALPLLVPHCNPSQDCVVGGYTVPKGSRIFVNVWSIHR DPSVWKDDPSEFKPERFVDSSFDYSGNDLTYFPFGSGRRICAGIAMAERMFLFSLATFLHSFNWKLPQGKKNVDLAEKFGIVLKLKSPLIAVPVPRLPNS SQYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	1.0	0.9332
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	2.0	0.9103
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	3.5	0.8854
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	3.5	0.8875
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	5.7	0.8911
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	5.7	0.8608
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	5.7	0.8790
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	5.9	0.8851
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	7.3	0.8741
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	8.1	0.8727

Compare expression of checked genes

Lus10032223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.