Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18230 296 / 1e-102 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024587 [exp] 384 / 1e-136 AT4G18230 303 / 2e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352000 [exp] 297 / 1e-102 AT4G18230 272 / 6e-93 unknown protein Potri.002G170700 [exp] 155 / 3e-47 AT4G18230 140 / 1e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF08660 [flax] [poplar] Alg14 Oligosaccharide biosynthesis protein Alg14 like
Representative CDS sequence Show only first row Show all	>Lus10032224 pacid=23168629 polypeptide=Lus10032224 locus=Lus10032224.g ID=Lus10032224.BGIv1.0 annot-version=v1.0 ATGGAGATGAATAAGGAACATGACTGTTGCTACTCGATCGCAACTGTAATCGCTATCTTCTTACTGATGCTTGTAGTTCGAGTGGTCTATGTCCTTTATT GGACTGGAAAACCATTTTCTGCTAAATCTTCAAAGCCACGGAGTACTTTGATTGTTCTAGGTTCAGGAGGGCACACGGCAGAAATGATTGACATAGTGTC GGGGATACGAAAAGATAGGTTCACTCCCAGGTTCTACATAGCTGCAGCCACTGATAATATGAGTCTGCAGAAAGCTCGAGTTTTGGAGGACTCGTTAGTT GATGCGGATCAAGGCAAGAAGGTACCTGCACAGTTTATGCAGATATACAGAAGCAGGGAAGTCGGACAATCATATATTACCTCAATCGGGACAACCCTTA TAGCCATTTCTCACGCATTATGGCTAATGCTCAGAATCAGGCCAGAAGTGGTCCTCTGCAACGGCCCTGGAACATGTATTCCTCTGTGTATGATTGCATT CTTGTTCAAGGTGATGGGAATCAGATGGTCATCGATATTCTACGTCGAGAGCATCGCAAGAGTGAAGAAGCTATCCTTAAGCGGCTTACTTCTTTACAAA CTTCAGATAGCTGATCAGTTCTTTGTCCAATGGCCCCAACTGCAGAAGAAATACCCACGAGCTCATTACGTCGGTTGCTTGATGTAA
AA sequence Show only first row Show all	>Lus10032224 pacid=23168629 polypeptide=Lus10032224 locus=Lus10032224.g ID=Lus10032224.BGIv1.0 annot-version=v1.0 MEMNKEHDCCYSIATVIAIFLLMLVVRVVYVLYWTGKPFSAKSSKPRSTLIVLGSGGHTAEMIDIVSGIRKDRFTPRFYIAAATDNMSLQKARVLEDSLV DADQGKKVPAQFMQIYRSREVGQSYITSIGTTLIAISHALWLMLRIRPEVVLCNGPGTCIPLCMIAFLFKVMGIRWSSIFYVESIARVKKLSLSGLLLYK LQIADQFFVQWPQLQKKYPRAHYVGCLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18230			unknown protein		Lus10032224 [exp]	0	1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	7.2	0.8424
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Lus10042253 [exp]	8.3	0.7476
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	9.0	0.8096
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	16.6	0.8163
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	22.5	0.8012
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	22.8	0.7419
AT4G22740			glycine-rich protein (.1.2)		Lus10032201 [exp]	28.3	0.7045
AT5G03460			unknown protein		Lus10014419 [exp]	30.0	0.8010
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	32.0	0.7595
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	32.2	0.7522

Compare expression of checked genes

Lus10032224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.