Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22670 317 / 8e-105 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17880 263 / 2e-84 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G12400 63 / 2e-10 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 59 / 2e-09 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 54 / 9e-08 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 54 / 1e-07 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09420 53 / 3e-07 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G33400 52 / 8e-07 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04710 50 / 2e-06 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G23570 44 / 9e-05 SGT1A phosphatase-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024590 [exp] 375 / 2e-127 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10031334 [exp] 268 / 5e-86 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10028919 [exp] 64 / 1e-10 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 62 / 3e-10 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 62 / 4e-10 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 61 / 2e-09 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10003260 [exp] 54 / 1e-07 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10031418 [exp] 54 / 2e-07 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 53 / 3e-07 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114000 [exp] 330 / 5e-110 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.001G118900 [exp] 325 / 2e-108 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.015G036000 [exp] 274 / 8e-89 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.012G045000 [exp] 237 / 5e-75 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.013G042300 [exp] 63 / 2e-10 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 61 / 5e-10 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.001G119500 [exp] 56 / 2e-08 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 55 / 5e-08 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 53 / 2e-07 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 50 / 1e-06 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10032227 pacid=23168694 polypeptide=Lus10032227 locus=Lus10032227.g ID=Lus10032227.BGIv1.0 annot-version=v1.0 ATGGACGCCGCCAAGCTCAAAGAGCTCAAGAACTTCGTCGAACTCTGCAAGTCCAATCCCTCCGTCCTCACCGATCCTTCCCTCTCCTTCTTCCGCGACT ACGTCGAGAGTCTCGGTGGTAAACTACCTCCCGCTGCTTACTCCTCCAGATCGAGGAGTCATGTAGAGGAAGATAGTGACGAGGAGATTCCGGAGAAGGA ATCGCCAACGGTTGAGGAACCGGAGGAGGAAGAGGAGGAGGAGGATGAGATAATCGAGTCGGATGTTGAGCTGGAAGGTGACACTGTCGAGCCTGACAAT GATCCTCCTCAGAAGATGGGAGACTCGTCAGTTGAGGTCAGTGAGGAAAACCGTGAAGCTTCGCAGGACGCTAAGGGAAAAGCTATGGAAGCTATCTCTG AAGGTAAGCTGGAGGATGCTATTGAGCATTTGACTGAAGCTATTTTGCTCAATCCATTGTCGGCAATCATGTATGGGACTAGAGCAACTGTTTACATCAA GATGAAGAAACCGAATGCTGCTATCAGGGATGCCAATGCGGCTCTTGAGATAAACCCGGACTCCGCCAAGGGTTACAAGTCTCGTGGCATGGCAAGGGCA TTGCTTGGCCAGTGGGAGGAGGCTGCTAAGGATCTTCATGTAGCGTCGAAGTTGGATTATGATGAGGAAATAAGTGTTGTTCTCAAGAAGGTTGAACCCA ATGCACACAAGATTGAGGAGCACCGTAAGAAGTATGATAGACTGCGTAAAGAGAGAGAGGATAGGAAGGCTGAGCGGGATAGGCGTCGCAGACGTGCTAA AGCTCAAGCCGAGTATGAAAGGGCGAAGAAGCAAGAGCAATCATCTTCCAGTTCGAGACCTGGAGGCATGCCTGGAGGATTCCCAGGTGGCATGCCAGGA GGCTTCCCCGGTATGCCCGGAGGCTTTCCTGGTATGCCTGGTGGCTTCCCAGGAGGCATGCCTGCTGGTATGGGTGGAAGCGGCATGCCTGCAGGTATGG GTGGAAGCGGCATGCCTGCTGGTATGGGTGGAAGTGGCATGCCTGGAGCAGGAATGCCTGGAGCAGGAATGCCTGGAAATGTTGATTTCAGCAAAATCCT GAATGACCCTGAATTGATGTCTGCCTTCAGCGATCCAGAGATTATGGCTGCTCTTCAAGATGTTATGAAGAACCCAGCTAACCTCGCAAAGCACCAGTCG AACCCGAAGGTGGCTCCCGTCATTGCCAAAATGATGAACAAATTCTCCGGCCCGAAGTAA
AA sequence Show only first row Show all	>Lus10032227 pacid=23168694 polypeptide=Lus10032227 locus=Lus10032227.g ID=Lus10032227.BGIv1.0 annot-version=v1.0 MDAAKLKELKNFVELCKSNPSVLTDPSLSFFRDYVESLGGKLPPAAYSSRSRSHVEEDSDEEIPEKESPTVEEPEEEEEEEDEIIESDVELEGDTVEPDN DPPQKMGDSSVEVSEENREASQDAKGKAMEAISEGKLEDAIEHLTEAILLNPLSAIMYGTRATVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGMARA LLGQWEEAAKDLHVASKLDYDEEISVVLKKVEPNAHKIEEHRKKYDRLRKEREDRKAERDRRRRRAKAQAEYERAKKQEQSSSSSRPGGMPGGFPGGMPG GFPGMPGGFPGMPGGFPGGMPAGMGGSGMPAGMGGSGMPAGMGGSGMPGAGMPGAGMPGNVDFSKILNDPELMSAFSDPEIMAALQDVMKNPANLAKHQS NPKVAPVIAKMMNKFSGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	0	1
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	1.4	0.9090
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	1.4	0.9286
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	1.7	0.9056
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	4.0	0.8955
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	4.6	0.8847
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	5.2	0.8794
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	5.5	0.8595
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	5.9	0.8898
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10024937 [exp]	6.3	0.8237
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	6.9	0.8584

Compare expression of checked genes

Lus10032227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.