Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62780 297 / 9e-102 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024592 [exp] 433 / 4e-155 AT1G62780 319 / 3e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119100 [exp] 313 / 6e-108 AT1G62780 318 / 1e-110 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032229 pacid=23168475 polypeptide=Lus10032229 locus=Lus10032229.g ID=Lus10032229.BGIv1.0 annot-version=v1.0 ATGCTGCTGACGAAGCATCGAACGGATAACAATTCCCGCCACCGGAAAACACTCACTCACGAGATAACGCTACAAGAGAAGAAGAAGAAGAAGAAAGCAC TCTCCAAGTTCATCAAGAGCTTCCCAAACGCACAATCAATGGCGGCTCTACTCGGCATGTCTACAAACTTCGCCTTCCGCGGCGTCGGGAATCGCTCGAC GATCCAAACAAAGACAACCGGCCACCCGCCGAGAATATGCTGCGTTAATTGGGATCCGGAAGGAATACTAGGCACGCCGAAGACAGGACACCTAGCTCGG CTGGAATTCAAGCGTCGGCTGGAGAAGGACTCCGATGCTCGCGAGGCGTTCGAGAAGCACCTCCGCGAGGAGAAAGAGCGTCGCCGAACTCTTCGGGAAT CCCGGGTAATACCGGAGACTCCGGCGGGGCTGATTGAGTACTTCCTCGACACTGAAGCTCAGGAGATCGAGTACGAGATCGCAAGGCTGAGGCCGCGGCT GAACGAGGAGTTTTTTGGACAGCTGCAGCTTGAAGTTGGCCAGCTTCGTTTTGCTGTTACAAAGACGGAGGAAATGGAAGACAGGGTGTTTGAATTGGAA ACGTTACAGAAGGCACTGAAAGAAGGGATAGAAGCATATGATCGTATGCAAGTTGAGCTTATAACAGCGAGGAAAAGCTTGACCGAAATATTGACATCCA AGGACATTAAAGCAACTCTGTTGGAAATGGTTGAGCGGAATGAACTTAATAGGTCTTTGCTGACACTTCTCGATGAAAACATTGGAAATGCTCAAAAGGG CAATCAGAAAGAAGCAGCTGCTTTCATGGAAAAAATCCGTGGAGCTATTCTTAAGTATATTACAGTATGA
AA sequence Show only first row Show all	>Lus10032229 pacid=23168475 polypeptide=Lus10032229 locus=Lus10032229.g ID=Lus10032229.BGIv1.0 annot-version=v1.0 MLLTKHRTDNNSRHRKTLTHEITLQEKKKKKKALSKFIKSFPNAQSMAALLGMSTNFAFRGVGNRSTIQTKTTGHPPRICCVNWDPEGILGTPKTGHLAR LEFKRRLEKDSDAREAFEKHLREEKERRRTLRESRVIPETPAGLIEYFLDTEAQEIEYEIARLRPRLNEEFFGQLQLEVGQLRFAVTKTEEMEDRVFELE TLQKALKEGIEAYDRMQVELITARKSLTEILTSKDIKATLLEMVERNELNRSLLTLLDENIGNAQKGNQKEAAAFMEKIRGAILKYITV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62780			unknown protein		Lus10032229 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	4.7	0.9566
AT1G62780			unknown protein		Lus10024592 [exp]	4.9	0.9436
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	5.5	0.9465
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	5.7	0.9382
AT2G21385			unknown protein		Lus10017494 [exp]	6.0	0.9470
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	9.4	0.9403
AT2G04360			unknown protein		Lus10012308 [exp]	10.4	0.9328
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031215 [exp]	11.4	0.9399
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	11.7	0.9463
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	13.0	0.9358

Compare expression of checked genes

Lus10032229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.