Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62770 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 125 / 5e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 120 / 4e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 119 / 2e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 117 / 7e-33 PME1 pectin methylesterase inhibitor 1 (.1) AT5G62360 102 / 4e-27 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 98 / 2e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 95 / 4e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 95 / 3e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 91 / 1e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024593 [exp] 270 / 1e-92 AT1G62770 162 / 2e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 138 / 4e-41 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 137 / 2e-40 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 122 / 2e-34 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 115 / 3e-32 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 110 / 5e-30 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 103 / 2e-27 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 91 / 2e-22 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10030292 [exp] 86 / 1e-20 AT4G00080 158 / 1e-48 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127500 [exp] 137 / 1e-40 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 136 / 3e-40 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 130 / 6e-38 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.001G119200 [exp] 104 / 4e-29 AT1G62770 117 / 2e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 103 / 2e-27 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128900 [exp] 102 / 3e-27 AT4G25250 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 100 / 2e-26 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 100 / 4e-26 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 98 / 2e-25 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G145800 [exp] 97 / 4e-25 AT4G00080 164 / 4e-51 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10032230 pacid=23168466 polypeptide=Lus10032230 locus=Lus10032230.g ID=Lus10032230.BGIv1.0 annot-version=v1.0 ATGGCAAACCATCTTCTTCTTTTCCTTCCATTCATCCTCCTACCCCTCTCATTTCCCCACTTCACAACCTCAGCCATCAACCCACAACAACAACAACAAC CATCACCCTTCATATCATCGTCATGCAAGCTCACCCTCTACCCAGACCTCTGCATCCAGTCCCTCTCCCCTTACTCAACCTCCATCCGCCAAAACGACCA CCGCCGCCTCGCCCTCGCCGCCCTCTCCTTCAGCCTCTCCCGCGCCAGGTCAGCCTCCGCCTACATCTCCACCGTCCGCCGCCCCATTACTCCGAGTTTG AACCAGGCGGTCGATGACTGCATCCGCAACATGGCCGACGGTGTCGCCCGGCTGACCCAGTCGGTCAGCGAGCTGGGCCAGATGGGCTCGGGCGGGCCCG AGGATCGGTTCCAGTGGCACATGAGTAACTTGCAGACGTGGGTGAGTACCGCGCTGACCTGCGAGAACAGCTGCGTTGACGGGTTTAACGCGAGGGAGCT GGATGGTCCGGTTAAGGATGCGGTTCGGAACCGGGTTGTTTATGTGGCTAAGGTTACTAGTAATGCTCTTGCCTTGATTCATGGGTTTGCTTCTAAGCAT AACCGCCCTGGGAGGCTTCCTTGA
AA sequence Show only first row Show all	>Lus10032230 pacid=23168466 polypeptide=Lus10032230 locus=Lus10032230.g ID=Lus10032230.BGIv1.0 annot-version=v1.0 MANHLLLFLPFILLPLSFPHFTTSAINPQQQQQPSPFISSSCKLTLYPDLCIQSLSPYSTSIRQNDHRRLALAALSFSLSRARSASAYISTVRRPITPSL NQAVDDCIRNMADGVARLTQSVSELGQMGSGGPEDRFQWHMSNLQTWVSTALTCENSCVDGFNARELDGPVKDAVRNRVVYVAKVTSNALALIHGFASKH NRPGRLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	0	1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	1.4	0.9786
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	1.7	0.9827
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	4.0	0.9577
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	4.2	0.9446
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	5.7	0.9536
AT1G06930			unknown protein		Lus10024185 [exp]	6.0	0.9673
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	6.3	0.9566
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	6.9	0.9648
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	8.3	0.9690
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	10.6	0.9600

Compare expression of checked genes

Lus10032230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.