Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62760 127 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 97 / 1e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 96 / 3e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 94 / 1e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 89 / 7e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 89 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 87 / 3e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 88 / 4e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 83 / 1e-19 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 80 / 2e-18 PME1 pectin methylesterase inhibitor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024595 [exp] 311 / 1e-108 AT1G62760 141 / 6e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 184 / 1e-58 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 177 / 7e-56 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 108 / 2e-29 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 108 / 2e-29 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 105 / 4e-28 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 100 / 2e-26 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031717 [exp] 100 / 4e-26 AT5G62360 179 / 3e-57 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 100 / 5e-26 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119300 [exp] 123 / 6e-35 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 122 / 1e-34 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 112 / 5e-31 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 112 / 1e-30 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 99 / 7e-26 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 96 / 2e-24 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 94 / 6e-24 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 92 / 3e-23 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 92 / 5e-23 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128500 [exp] 89 / 1e-21 AT4G25250 144 / 2e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10032232 pacid=23168516 polypeptide=Lus10032232 locus=Lus10032232.g ID=Lus10032232.BGIv1.0 annot-version=v1.0 ATGAACACAGCTCCAGCAGCAGCAATCTTCACACTAATCATCATCTCTACCCAACTCCTCCTTTCAACCACCGTCGCCGCCGAACAAACCACCACCGCGG ACTTCATCAAAACCTCCTGCAACTCAACCCTCTACCGCAAACTCTGCTTCCGATCACTCTCCCCGTACGCCTCCGAAATCGGATCCGACCCGAAACTCCT CGCACTCAAGTCCCTCAACATAACCCTCGAAGTCTCCCAATCCGCATCCAAGCTCATGAAGCGTATCGCCCGGATCCCCGGCGTCACCGGGGCAGCGGCG GACTGCGTCGAGGAGGTCGAGAACGCGGTGGACGCTCTGGCCAAGTCGATGGGAGAACTCCGTGGGGCTCCGAAAGGGGGAGAGCCCGGGTTCTGTCGGG TCATCGACGACGTGGAGACTTTTGTCAGTGCAGCGGAGACGTTTGACGAGACGTGTATTGATGGGTTTGAGGAGGCGGCGGGGAGGATAGTTGGTGGGTC GTCGTCGGCGGCGAAGGTTAACCGGAATGCGAAGAAGATTGTGGAGAAAAGGGTGAAGAAGGTCGAGAAGTATACGAGTAATTGTTTGGCCTTGGTTGAT CTCTACGCTTCTGTGGAATTTCGCCATGTTAAGTGTTGA
AA sequence Show only first row Show all	>Lus10032232 pacid=23168516 polypeptide=Lus10032232 locus=Lus10032232.g ID=Lus10032232.BGIv1.0 annot-version=v1.0 MNTAPAAAIFTLIIISTQLLLSTTVAAEQTTTADFIKTSCNSTLYRKLCFRSLSPYASEIGSDPKLLALKSLNITLEVSQSASKLMKRIARIPGVTGAAA DCVEEVENAVDALAKSMGELRGAPKGGEPGFCRVIDDVETFVSAAETFDETCIDGFEEAAGRIVGGSSSAAKVNRNAKKIVEKRVKKVEKYTSNCLALVD LYASVEFRHVKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	0	1
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10005280 [exp]	3.6	0.6988
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	5.5	0.6882
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	14.4	0.6898
AT5G40450			unknown protein		Lus10001136 [exp]	16.0	0.6798
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	24.0	0.6602
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	25.7	0.6517
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	28.6	0.6345
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	30.9	0.6760
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	34.8	0.5963
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	36.0	0.6653

Compare expression of checked genes

Lus10032232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.