Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70720 78 / 6e-18 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 75 / 5e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 75 / 8e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 74 / 1e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 72 / 1e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 71 / 3e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 68 / 3e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 67 / 1e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 64 / 6e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23205 59 / 4e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024596 [exp] 279 / 3e-97 AT5G62360 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 77 / 7e-18 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 77 / 1e-17 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 77 / 2e-17 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 77 / 2e-17 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038645 [exp] 77 / 2e-17 AT2G01610 212 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 76 / 4e-17 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037919 [exp] 74 / 1e-16 AT1G14890 137 / 3e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 67 / 1e-13 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109300 [exp] 78 / 7e-18 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 76 / 2e-17 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128900 [exp] 76 / 3e-17 AT4G25250 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 75 / 7e-17 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128100 [exp] 73 / 4e-16 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 71 / 2e-15 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 71 / 3e-15 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 71 / 3e-15 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 70 / 3e-15 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128500 [exp] 70 / 5e-15 AT4G25250 144 / 2e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10032233 pacid=23168508 polypeptide=Lus10032233 locus=Lus10032233.g ID=Lus10032233.BGIv1.0 annot-version=v1.0 ATGAACACTTCACCAACCTTTCTCCTTCTACTCCTAATCACAGCCGCCATCTCCGCAGCCGACACGGATTACATCCAAACCTCACGCCAAGCCTCCACTC GCTACCCGGACCTGTGCATCTCAACCTTGTCCCCACAAGCCTCCAACATAACCACCCCCAAGCTCCTCTCCTCGGCCGCCCTCTATGCAGCCCTGGCCGC GGCCAAGTCCACTTCGAAATCGATCGAGACGAGGCCGTCCTCGTGGAGTCCCTGGCTGAGGGACTGCAGGGAGGAGTTGGGTGACTCGGTGGACCGGCTC CGCGACTCGGCCAAGGAGATGAAAGGTGAGGTAGTGCTGAGTAGGTTCCAGGTCAGCAACGTACAGACGTGGGCCAGCGCTGTAATGACGTGTATGGACA CGTGTACGGATGGGTTGGTGGAAGGGGAAGTGAAGAGATGGGTTGTGGAGAAGAGTGGGATTGTCAAGGCTGGGTTTCTGATTAGTAATGCCTTGGAGTT TGTTAATAAGTATGGTGATGGTCTTGTTAATCAGTGA
AA sequence Show only first row Show all	>Lus10032233 pacid=23168508 polypeptide=Lus10032233 locus=Lus10032233.g ID=Lus10032233.BGIv1.0 annot-version=v1.0 MNTSPTFLLLLLITAAISAADTDYIQTSRQASTRYPDLCISTLSPQASNITTPKLLSSAALYAALAAAKSTSKSIETRPSSWSPWLRDCREELGDSVDRL RDSAKEMKGEVVLSRFQVSNVQTWASAVMTCMDTCTDGLVEGEVKRWVVEKSGIVKAGFLISNALEFVNKYGDGLVNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	2.0	0.8431
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	2.4	0.8731
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	6.9	0.8327
AT4G37810			unknown protein		Lus10011570 [exp]	10.6	0.8084
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	11.4	0.8427
AT1G50660			unknown protein		Lus10043111 [exp]	13.0	0.8210
					Lus10038805 [exp]	18.3	0.7514
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	18.4	0.7949
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	20.6	0.8446
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	23.2	0.8446

Compare expression of checked genes

Lus10032233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.