Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62740 848 / 0 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 837 / 0 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 833 / 0 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 90 / 2e-19 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 84 / 3e-17 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04710 79 / 2e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G42810 78 / 5e-15 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G22670 69 / 3e-12 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17970 68 / 7e-12 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G30480 67 / 7e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024597 [exp] 1019 / 0 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 944 / 0 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 920 / 0 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 91 / 1e-19 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025656 [exp] 85 / 3e-17 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 84 / 3e-17 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021905 [exp] 82 / 1e-16 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042001 [exp] 81 / 8e-16 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 81 / 1e-15 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119500 [exp] 869 / 0 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 857 / 0 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 94 / 7e-21 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 93 / 2e-20 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G177400 [exp] 91 / 2e-19 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G054800 [exp] 81 / 5e-16 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 79 / 3e-15 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G046900 [exp] 79 / 5e-15 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 78 / 8e-15 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.018G100700 [exp] 73 / 6e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10032234 pacid=23168600 polypeptide=Lus10032234 locus=Lus10032234.g ID=Lus10032234.BGIv1.0 annot-version=v1.0 ATGGCGGACGAAGCCAAAGCCAAGGGCAACGCCGCCTTCTCCTCCGGAGACTACTCCTCCGCCGTCAAGCACTTCACAGAAGCAATCTCTCTCTCGCCTT CCAACCACGTCCTCTACTCTAACCGATCCGCCGCCCACGCCTCCCTCCAGAACTACTCCGACGCCCTGACCGACGCCGAGAAGACCGTCGAGCTGAAACC CGACTGGGCCAAAGGATACTCCAGGCTCGGTGCTGCTCACAGCGGATTGAACCAGCATCAGGACTCCATCACCGCGTACAAGAAGGGATTGGAGCTCGAT CCTAGCAACGAAGCTTTGAAATCAGGATTGGCAGATGCTGAATCCAGAGCTTCTTCTTCTTCTAGGTCTAGAGCTGCTCCTCCTCCGCAGGGTACGAATC CGTTCTCCGATGCGTTTTCGGGGCCGGAGATGTGGGCGAAGCTGACGGCGGATCCGTCTACTAGGGTTTTCCTGCAGCAGCCGGATTTCGTCAGGATGAT GAAGGAGATTCAGAAGAATCCTAGCAATTTGAATCTGTACTTGAAGGATCAGAGAGTTATGCAGGCTTTGGGGGTTTTGTTGAATGTGAAGCTCAGGGGT GCTGATGCCGCCGGTGAAGACATGGATATTCCGGAGGCAGAGACAGAGGTTGAGGTGGAGGCTGCTCCTTCTTCTGCTCCGGTGGAGGAGAAGAGGAGTC GGGAGCCTGAGCCGGAACCTATGGAGGTGCTGGAGGAGAAGGAGGGTAAAGCTCAGGCCTTGAAGGAGAAAGAGTTGGGGAATGCTGCTTACAAGAAGAA GGATTTCGAAACTGCGATTTCACATTATACAAAGGCGATTGAGCTCTATGATGAGGACATTTCGTTTTTGACGAATCGCGCTGCTGTGTACTTGGAGATG GGCAAGTATGAAGAGTGTATCAAGGACTGTGACAAGGCAGTGGAGCGTGGAAGGGAGCTTAGATCAGATTTCAAGATGGTAGCAAGAGCTTTGACAAGGA AAGGATCCGCCTTGGTGAAAATGGCTAAAACTTCTAAGGATTACGAGCCAGCCATCGAGACATTCCAAAAGGCACTGACCGAACACCGCAACCCCGATAC ATTGAAGAAGCTAAATGAAGCAGAGAAGGCCAAGAAGGACCTCGAACAGCAGGAGTACTTCGATCCTAAGTTGGCTGATGAAGCACGCGAGAAAGGAAAC GAATGCTTCAAGGAGCAGAAATATCCCGATGCAGTGAGGCATTACACTGAAGCAATCAAAAGAAACCCTAAGGATCACAAGGCATACAGCAACAGAGCTG CTTGCTACACGAAACTCACGGCTATGCCCGAGGGGTTGAAGGATGCAGAGAAGTGCATCGAGCTCGACCCCACTTTTGCCAAAGGGTACACGAGGAAGGG CGCTGTTCAGTTCTTCATGAAAGAGTATGAGAAGGCATTGGAGACCTACCAAGCCGGATTGAAACACGACCCTCGAAACCAAGAGCTACTCGATGGTGTG AGAAGATGCATCGAGCAGATGAATAAGGCTAGCCGTGGGGATCTAACCCCTGAAGAACTGAAAGAGAGACAGGCTAAGGGAATGCAGGACCCGGAAGTCC AGAACATCCTCTCAGACCCTGTCATGAGACAAGTGTTAACGGACATCCAGGAGAACCCTAGTGCAGCTCAGGAGCACATGAAGAACCCGATGGTGATGAA CAAGATCCAGAAGCTGGTGAATGCCGGCATCATCCAAGTTCGATAG
AA sequence Show only first row Show all	>Lus10032234 pacid=23168600 polypeptide=Lus10032234 locus=Lus10032234.g ID=Lus10032234.BGIv1.0 annot-version=v1.0 MADEAKAKGNAAFSSGDYSSAVKHFTEAISLSPSNHVLYSNRSAAHASLQNYSDALTDAEKTVELKPDWAKGYSRLGAAHSGLNQHQDSITAYKKGLELD PSNEALKSGLADAESRASSSSRSRAAPPPQGTNPFSDAFSGPEMWAKLTADPSTRVFLQQPDFVRMMKEIQKNPSNLNLYLKDQRVMQALGVLLNVKLRG ADAAGEDMDIPEAETEVEVEAAPSSAPVEEKRSREPEPEPMEVLEEKEGKAQALKEKELGNAAYKKKDFETAISHYTKAIELYDEDISFLTNRAAVYLEM GKYEECIKDCDKAVERGRELRSDFKMVARALTRKGSALVKMAKTSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEYFDPKLADEAREKGN ECFKEQKYPDAVRHYTEAIKRNPKDHKAYSNRAACYTKLTAMPEGLKDAEKCIELDPTFAKGYTRKGAVQFFMKEYEKALETYQAGLKHDPRNQELLDGV RRCIEQMNKASRGDLTPEELKERQAKGMQDPEVQNILSDPVMRQVLTDIQENPSAAQEHMKNPMVMNKIQKLVNAGIIQVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	0	1
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	1.0	0.8046
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	4.2	0.6935
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	9.2	0.6682
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	10.6	0.6643
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	13.8	0.7229
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	13.8	0.6689
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10037000 [exp]	24.9	0.6617
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	25.9	0.6717
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10024590 [exp]	40.6	0.6622
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	42.6	0.6497

Compare expression of checked genes

Lus10032234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.