Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12410 142 / 2e-43 SAUR-like auxin-responsive protein family (.1) AT4G22620 127 / 1e-37 SAUR-like auxin-responsive protein family (.1) AT3G60690 98 / 5e-26 SAUR-like auxin-responsive protein family (.1) AT2G45210 95 / 6e-25 SAUR-like auxin-responsive protein family (.1) AT2G46690 74 / 4e-17 SAUR-like auxin-responsive protein family (.1) AT4G00880 71 / 3e-16 SAUR-like auxin-responsive protein family (.1) AT3G61900 69 / 4e-15 SAUR-like auxin-responsive protein family (.1) AT5G53590 67 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT4G34780 66 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT4G38850 65 / 3e-14 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024600 [exp] 268 / 9e-93 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 128 / 3e-38 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) Lus10028920 [exp] 112 / 2e-32 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 91 / 3e-23 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 89 / 1e-22 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 89 / 1e-22 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 71 / 6e-16 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 65 / 4e-14 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 64 / 8e-14 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113100 [exp] 120 / 5e-35 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 114 / 3e-32 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 96 / 3e-25 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 96 / 4e-25 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 75 / 8e-18 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 73 / 7e-17 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 69 / 2e-15 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 67 / 1e-14 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 66 / 4e-14 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.004G165800 [exp] 60 / 5e-12 AT4G34770 152 / 2e-49 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10032237 pacid=23168494 polypeptide=Lus10032237 locus=Lus10032237.g ID=Lus10032237.BGIv1.0 annot-version=v1.0 ATGAAAATAGAGAACTCAGCTTCATTCAAGAAGATGAGAGGAATCAAGCTCCACCGGAAATTCTCCACAGTCTTCAAGTGGGCAATCCGGCGACCGAAAT CCCGAGCATCCATCACCAACCCGATCTCAACAATCACCTCCCTAATCCGGATCCTCCACCAGAAGGCCCAGACGGTGATCTCGCCCTCCTCCTCTCCGCG CCCCTCGCCGAACTGCGTCCAGCTGGGTCGGGTAAGGAAACCCGAAGAGAAGATACCCCCGAAGAAGGGCCACTTGGCGGTGTACGTCGGGGAGCCCGAA GACGAGGCGCGGCCGGTCATGGTTCCGTTGATATACTTCAACCATCCTCTGTTCGGGGAGCTTCTGGAGGAAGCCGAGCGGGTCTACGGGTTCGACCATC CGGGTCGGATCAGTATCCCATGTGGGTACTCGAAGTTCGAGACGGTGAAGATGCGGATCGATGCTTGGGATGGTGGGTTCTGTGGCCGCCGGCGGCGGCT GTTTTTTCGGCAGAACGGTGGGTTAGTTAGATGA
AA sequence Show only first row Show all	>Lus10032237 pacid=23168494 polypeptide=Lus10032237 locus=Lus10032237.g ID=Lus10032237.BGIv1.0 annot-version=v1.0 MKIENSASFKKMRGIKLHRKFSTVFKWAIRRPKSRASITNPISTITSLIRILHQKAQTVISPSSSPRPSPNCVQLGRVRKPEEKIPPKKGHLAVYVGEPE DEARPVMVPLIYFNHPLFGELLEEAERVYGFDHPGRISIPCGYSKFETVKMRIDAWDGGFCGRRRRLFFRQNGGLVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12410			SAUR-like auxin-responsive pro...		Lus10032237 [exp]	0	1
AT4G31330			Protein of unknown function, D...		Lus10026976 [exp]	10.1	0.7396
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	13.1	0.7752
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	14.4	0.7664
AT3G52710			unknown protein		Lus10022708 [exp]	25.1	0.7360
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10006435 [exp]	30.7	0.7595
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	31.3	0.7641
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	37.7	0.7536
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	43.7	0.7196
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10002852 [exp]	45.3	0.7065
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	54.4	0.7184

Compare expression of checked genes

Lus10032237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.