Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45190 190 / 2e-60 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 178 / 9e-56 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2) AT1G08465 157 / 3e-48 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 155 / 2e-47 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT1G23420 137 / 6e-40 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT1G69180 113 / 5e-31 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024603 [exp] 414 / 2e-148 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10019407 [exp] 154 / 2e-46 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10029135 [exp] 143 / 4e-42 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10030596 [exp] 144 / 6e-42 AT1G23420 194 / 8e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 139 / 1e-40 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10010361 [exp] 125 / 5e-35 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036496 [exp] 122 / 2e-34 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036811 [exp] 120 / 5e-34 AT1G69180 187 / 4e-61 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Lus10000644 [exp] 107 / 2e-28 AT1G69180 177 / 5e-57 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120200 [exp] 229 / 4e-76 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 227 / 3e-75 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.014G066700 [exp] 204 / 2e-66 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 195 / 1e-62 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 162 / 5e-50 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.018G129800 [exp] 161 / 1e-49 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.009G000100 [exp] 155 / 8e-48 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.001G214700 [exp] 142 / 7e-42 AT1G08465 183 / 8e-59 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.008G189000 [exp] 140 / 5e-41 AT1G23420 213 / 7e-70 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.010G042400 [exp] 136 / 1e-39 AT1G23420 191 / 3e-61 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10032240 pacid=23168553 polypeptide=Lus10032240 locus=Lus10032240.g ID=Lus10032240.BGIv1.0 annot-version=v1.0 ATGTCAATGTCTTCCATGACCTTGTCCTTGGACCACCACTACCAACAACAACAGCAACAGATTCCGGAAGAACAGCTCTGTTATGTCCATTGCAACATCT GCGACACTGTCCTCGCTGTGAGTGTGCCGAGCTCGAGCTGGTTCAAGACTGTGACGGTCCGATGTGGACACTGCACCCATCTCCTCCCGGTCAACATGAT GCGCCCTAACTTCCTTCCTACTTCTCCCTCCCCAGCAATTGCTCCTCCTTTCCAACTCTTCTCCCCTACTACTACTCAATTGGATGAGTTCTCATCAAAC CCTAATGCCAACACTCCTTCTCCACCTCCACAGAACCTGTTGATGTTCAACAACCAGATCAACGATTTCGGGTTCCAGTCCGCAGCTCGATTTGCACCGG ATCATAATCATCAACATCTCGAGCTCCCTAGGCCGCCATTGGCTGTCAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCTGCCTACAACAGATTCAT CAAGGAGGAGATCCAGAGGATAAAGGCAGAAAACCCAGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCGCATATT CAGTTCGGGTTGATGCCAGATCAGCCCTTGAAGAAGAAGGCTAACACTCTCCTTCATCACCCTCCTCAGGAGGCAGAAGGTGGGTTCTTCAGTTCAGCTA ATGTTGGAGTTGCTGCTGCTCCTTACTGA
AA sequence Show only first row Show all	>Lus10032240 pacid=23168553 polypeptide=Lus10032240 locus=Lus10032240.g ID=Lus10032240.BGIv1.0 annot-version=v1.0 MSMSSMTLSLDHHYQQQQQQIPEEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNFLPTSPSPAIAPPFQLFSPTTTQLDEFSSN PNANTPSPPPQNLLMFNNQINDFGFQSAARFAPDHNHQHLELPRPPLAVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHI QFGLMPDQPLKKKANTLLHHPPQEAEGGFFSSANVGVAAAPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	1.0	0.9965
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	2.4	0.9874
					Lus10006724 [exp]	3.2	0.9822
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	3.2	0.9890
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	4.9	0.9821
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	4.9	0.9863
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	5.7	0.9717
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	5.7	0.9817
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	5.8	0.9713
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	7.3	0.9708

Compare expression of checked genes

Lus10032240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.