Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 795 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 794 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 479 / 2e-163 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT3G13784 447 / 1e-150 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 442 / 2e-149 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G55120 442 / 1e-148 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 435 / 6e-146 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 431 / 2e-144 ATCWINV4 cell wall invertase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024605 [exp] 1147 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 961 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 956 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 803 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 751 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 583 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10008392 [exp] 466 / 5e-158 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 454 / 4e-153 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 452 / 7e-153 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 899 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 845 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 739 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 479 / 4e-163 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 471 / 3e-160 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 471 / 6e-160 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 469 / 2e-159 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 459 / 3e-155 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032242 pacid=23168468 polypeptide=Lus10032242 locus=Lus10032242.g ID=Lus10032242.BGIv1.0 annot-version=v1.0 ATGGCAGACCACGAGCAGCCATTCCTCCTTCCGCTCTCCTCCGGATCGGTAAACCCCGAATATGGGGATGCCTCTGTAGGGAGATCCAACAAGAGGATTC TACTCCTCGCGGCGTTCGCCGGGATTTTCATCGTCTGCTTGGTTCTCGCCGGCGGGTACGACAACTCCGTCGTGGTGTTTAAACTCTCCGAATTGGTGGG CCCGAGTGTGATTAATAGTGAGCCGGAGAAGATTTCTCGTGAGAAAGAAGAAGAGTTCCCGTGGAATAACAGCATGTTGTCTTGGCAGAGAACTGCGTTT CACTTTCAGCCTGAGAAAAATTGGATGAACGGTCCATTGTACTACAAAGGGTGGTACCATTTCTTCTACCAATACAATCCAAACGCAGCCGTTTGGGGCG ATATCGTGTGGGGCCATGCAGTCTCACGCGACCTAATTCACTGGCTCTACCTTCCGTTAGCGATGGTTGCTGACCAATGGTACGACTTTAACGGTGTATG GACCGGTTCCGCCACGAAACTCCCTGACGGCAAGGTCGTGATGCTCTACACCGGTTCGACCAACGAATCGGTCCAGGTCCAAAACCTAGCCTACCCGGCA GACCCATCCGACCCGCTCCTCATCGAATGGGTCAAACACCCTGCAAACCCGGTCCTTGTCCCTCCACCGGGCATCAAAGACAAGGACTTCCGGGACCCGA CCACCGCATGGCGAACATCCGAAGGGAAGTGGCGAATCGCAATCGGGTCAAAGGTCAACCGAACCGGAGTCGCTCTCATCTACGACACAGAAGATTTCAT TAACTACGACCTGAAACCCGGGTTCCTCCACGGAGTACCGGATACAGGAATGTGGGAGTGCGTCGACTTTTATCCGGTGGCCGTCGCCGGTGGTAACGGG CTGGACACGTCAGCGAACGGCCCCGGAGTCCGCCACGTGGTGAAGGCGAGCATGGACGACGACCGGCACGATTACTACGCAATTGGAACTTACGACGAGG CGAAATCGAAGTGGTACCCCGATAACCCGGAAATCGACGTGGGGATTGGGATTCGGTATGATTACGGAATCTTCTATGCTGCTAAGACTTTCTACGATCA GAGTAAGCAGAGGAGGATTCTATGGGGGTGGATTGGTGAGTCGGACAGTGAAGATGCTGACATTAGGAAAGGATGGGCTTCACTTCAGAGCATTCCGAGG ACTGTTGTTCTAGATACAAAGACGGGCAGCAATCTTCTACAATGGCCCGTGGAAGAGACAGAAAGCTTGAGATTGAGGAGCAAAGAGTTCAATAACGTTG TAGTTAAGCCCGGATCGATCGTCCCGCTCGAGCTCGAAGCTGCTACACAGCTAGATATCGAGGCAGAGTTCGAGCTAGACCCCGAAGCCGTGCTGACAGC AGCCGAGTCCAATGACGACTTCAAATGCAGCGGAAGCAGAAACAGAGGCGCATTGGGACCGTTCGGCCTGCTAGTTCTGGCAGACGACACACAGACCGAG CAGACACCGGTGTACTTCTACGTCGTAAAGGGCTCGAACGGAACGTTAAGAACCCACTTCTGCACCGACCAGATGCGGTCTTCGCTGGCGAACGACGTGA ACAAGCAGGTTTACGGGAGCTCTGTTCCGGTCCTGGAGGGGGAGAAGTTCAAGATGAGGGTTTTGGTTGATCACTCGATCGTAGAAAGCTTCGGGCAAGG CGGGAGGGTTGTGATTAGCTCGAGGGTTTACCCGACGAAGGCGATCTACGGAGCTGCAAGGGTGTACTTGTTTAACCGTGGGAAGGCAGGGGTTGTGAGG GGTTCGGTCAAGGTTTGGCAGATGAACTCTGCTTTCATTCGGCCGTATTCCAAACAGTAG
AA sequence Show only first row Show all	>Lus10032242 pacid=23168468 polypeptide=Lus10032242 locus=Lus10032242.g ID=Lus10032242.BGIv1.0 annot-version=v1.0 MADHEQPFLLPLSSGSVNPEYGDASVGRSNKRILLLAAFAGIFIVCLVLAGGYDNSVVVFKLSELVGPSVINSEPEKISREKEEEFPWNNSMLSWQRTAF HFQPEKNWMNGPLYYKGWYHFFYQYNPNAAVWGDIVWGHAVSRDLIHWLYLPLAMVADQWYDFNGVWTGSATKLPDGKVVMLYTGSTNESVQVQNLAYPA DPSDPLLIEWVKHPANPVLVPPPGIKDKDFRDPTTAWRTSEGKWRIAIGSKVNRTGVALIYDTEDFINYDLKPGFLHGVPDTGMWECVDFYPVAVAGGNG LDTSANGPGVRHVVKASMDDDRHDYYAIGTYDEAKSKWYPDNPEIDVGIGIRYDYGIFYAAKTFYDQSKQRRILWGWIGESDSEDADIRKGWASLQSIPR TVVLDTKTGSNLLQWPVEETESLRLRSKEFNNVVVKPGSIVPLELEAATQLDIEAEFELDPEAVLTAAESNDDFKCSGSRNRGALGPFGLLVLADDTQTE QTPVYFYVVKGSNGTLRTHFCTDQMRSSLANDVNKQVYGSSVPVLEGEKFKMRVLVDHSIVESFGQGGRVVISSRVYPTKAIYGAARVYLFNRGKAGVVR GSVKVWQMNSAFIRPYSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10032242 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10041109 [exp]	1.7	0.8287
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10038891 [exp]	6.7	0.7989
					Lus10027917 [exp]	13.5	0.8197
					Lus10030905 [exp]	17.0	0.8236
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	18.1	0.8231
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032222 [exp]	32.4	0.8225
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	39.0	0.8211
					Lus10036436 [exp]	46.3	0.8190
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	74.6	0.7921
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	77.1	0.7102

Compare expression of checked genes

Lus10032242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.