Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12230 539 / 0 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024606 [exp] 711 / 0 AT1G12230 553 / 0.0 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120400 [exp] 571 / 0 AT1G12230 557 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00923 [flax] [poplar] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Lus10032243 pacid=23168596 polypeptide=Lus10032243 locus=Lus10032243.g ID=Lus10032243.BGIv1.0 annot-version=v1.0 ATGTCAGCTGCTACAGCTCTCTCCACCAAGTACCCTTCTCTGGTACAAAAACCATTCCCCAAGAATGGATCATCATCATCTTCATCTTCCCAAGCTTGCT TCAACCTCCGCCGTCGATCTTTCCCTCAACTTCGTGCCTCTTCAACTTCTTCTGTCCAGTCTGGTTCAAGCACTAGCAGTGAATTGGATGCAGTGTCTAG CTTCAGTGAGATTGTTCCTGATACTGTGATCTTCGATGATTTCGATAAGTTTCCTCCAACTGCAGCAACTGTCAGCTCCTCGCTTCTCCTGGGCATATGC AGCCTTCCTGATACCAAGTTCCGGAATGCCGTGGATATGGCATTGGCGGATTCTGGATGTGTAGCTTTGGACAACCCGGAGCTTAGACTGTCTTGTTTTA GCAGCAAGGCTTTAGTGAATGTTGGAGGGGATCTTGCGAAAATGGTACCGGGGAGGGTTTCAACTGAAGTGGATGCACGGTTGGCGTATGATACTCATGC CATAATTAGGAAGGTGCATGACTTGGTGAAGCTGTACTATGAAATTGATGTATCCGAAGACCGCTTGTTGTTCAAAATCCCTGCAACTTGGCAAGGAATT GAGGCTGCTAGGCTGTTGGAATCTGAAGGCATACAAACACATCTGACATTTGTATACAGCTTTGCTCAAGCTGCTGCTGCTGCTCAAGCTGGGGCATCAG TCATTCAGATTTTCGTCGGACGACTCAGGGATTGGGCTCGCAATCATTCCGGGGACATTGAGGTAGATGCTGCCTTGAAAAGAGGAGAGGACCCCGGCTT GGCTTTGGTTACGAAGGCGTATAACTACATTCACAAGTACGGACACAAGTCGAAGCTTATGGCAGCAGCAGTTCGAAACAAACAGGACTTATTCAGCCTT TTAGGAGTCGACTACATCATTGCACCATTGAAAGTACTATCGTCTCTCAAGCAGTCCATCGCCACCAATGACAAGTACGGTTTCGTGCAAAGACTATCCC CAGAGTCTGCTGCCAACTATAGCTTCAAGGATGAAGAGCTAGTGAAGTGGGATCAACTAAGCCTAGCATCGTCAATGGGACCTGCAGCAGTCGAGCTTCT AGCTAGCGGACTGGATGGCTATGCGATCCAAGCGAACCGCGTCGAGGAGCTATTTGCTAAGATCTGGCCACCACCAAATGTGTAA
AA sequence Show only first row Show all	>Lus10032243 pacid=23168596 polypeptide=Lus10032243 locus=Lus10032243.g ID=Lus10032243.BGIv1.0 annot-version=v1.0 MSAATALSTKYPSLVQKPFPKNGSSSSSSSQACFNLRRRSFPQLRASSTSSVQSGSSTSSELDAVSSFSEIVPDTVIFDDFDKFPPTAATVSSSLLLGIC SLPDTKFRNAVDMALADSGCVALDNPELRLSCFSSKALVNVGGDLAKMVPGRVSTEVDARLAYDTHAIIRKVHDLVKLYYEIDVSEDRLLFKIPATWQGI EAARLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDIEVDAALKRGEDPGLALVTKAYNYIHKYGHKSKLMAAAVRNKQDLFSL LGVDYIIAPLKVLSSLKQSIATNDKYGFVQRLSPESAANYSFKDEELVKWDQLSLASSMGPAAVELLASGLDGYAIQANRVEELFAKIWPPPNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	0	1
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	4.4	0.8007
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	6.5	0.7816
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	6.8	0.7854
AT1G08390			unknown protein		Lus10038152 [exp]	7.4	0.7582
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	10.4	0.7639
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	17.3	0.7577
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	18.3	0.7385
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	21.2	0.7219
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	23.5	0.7466
AT5G66090			unknown protein		Lus10041868 [exp]	29.8	0.7279

Compare expression of checked genes

Lus10032243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.