Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22590 531 / 0 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 516 / 0 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 488 / 5e-173 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G35910 384 / 1e-132 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 375 / 5e-129 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G78090 374 / 3e-128 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT4G39770 366 / 1e-125 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 362 / 5e-124 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 350 / 3e-119 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G22210 344 / 2e-117 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024607 [exp] 782 / 0 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031146 [exp] 489 / 6e-174 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 477 / 5e-169 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 474 / 4e-168 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 457 / 7e-160 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 369 / 8e-127 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 326 / 1e-109 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 308 / 1e-102 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 304 / 3e-101 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120500 [exp] 567 / 0 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 538 / 0 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.012G126100 [exp] 527 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 519 / 0 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.007G090900 [exp] 392 / 2e-135 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 391 / 4e-135 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 382 / 1e-131 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 335 / 1e-113 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 330 / 1e-111 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 277 / 2e-91 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10032244 pacid=23168554 polypeptide=Lus10032244 locus=Lus10032244.g ID=Lus10032244.BGIv1.0 annot-version=v1.0 ATGGAGATGAAGTCAAGTAGTTCGTCTCCAGTTCTTGCTGATCCTGCTCCAATTAACAAGTCAAGGCTTGGGATCCATTCAGCATACTCACAGTCAGGAG CTTCATTCTCCACTGGCAAGTACATAAACATCCCTAGAAAAAAGGCTGGAAAGCTTGATGACGTTCGCTCCAATGGGTGGCTCGATGCGATGAAATCATC GTCGCCTCCTCGTAAGAAGTTCATCAAGGGGTTCAGCAATGAGGTTTCATTAGAAGATCCTGACTTTGCTTATTCGTCTTGGATGCTCAAGTATCCATCA GCACTCAAATCTTTCGAGCAAATTACCAATTCCGCGAGGAACAAGAAGATAGCAGTGTTTCTGGACTACGACGGGACACTGTCTCCAATAGTAGATGACC CGGATCAAGCTATCATGTCAGAGGAGATGCGTTCCGCTGTAAGAAATGTAGCAAAGTATTTCCCAACTGCCATTATTAGTGGGAGAAGCCGTAACAAGGT TTTTGAGTTGGTAGGACTAACAGAGCTCTATTATGCTGGTAGCCATGGGATGGACATCAAGGGCCCTACCAACCAAACAGTGGCCAGTAGCCATCTTAAA TTTGTTGAATCTTCTGGCAAACAGGGGAAGGAGGAGAATCTTTTCCAGCCTGCCAGAGAATTCATACCTATGATTGATGAGGTTTTTAGAACCCTCGTCG AGAATACAAAAGAAATCAAAGGTGCAAAAGTTGAGAACCACAAGTTTTGTACCTCTGTACATTACCGTAACGTAGATGAAAAGAACTGGCCAGTTATCGC TCAACGTGTTCACGATATCCTAAAGGACTACCCTCGCTTGCGATTAACTCATGGGCGGAAGGTTTTAGAAGTCCGTCCAGAGATCGAGTGGGACAAAGGG AAAGCGGTAGAGTTTTTGCTCGAGTCACTGGGGCTAAGTGATCGGGACAACGTTCTGCCGGTGTACATTGGTGATGACCGGACCGACGAGGATGCATTCA AGGTGTTAAAGGAAGGGAAGAGAGGGTGTGGAATATTGGTCTCTTCCGTAGCTAAAGACAGCAATGCAATCTACTCTCTCAGAGACCCTACCGAGGTGAA GAGATTTCTGAATTCATTGGTGATATGGAAGAGGCTTGAAGGTGGGAGTGGAGGTATGGCCAACAGAAAAACAATTTAA
AA sequence Show only first row Show all	>Lus10032244 pacid=23168554 polypeptide=Lus10032244 locus=Lus10032244.g ID=Lus10032244.BGIv1.0 annot-version=v1.0 MEMKSSSSSPVLADPAPINKSRLGIHSAYSQSGASFSTGKYINIPRKKAGKLDDVRSNGWLDAMKSSSPPRKKFIKGFSNEVSLEDPDFAYSSWMLKYPS ALKSFEQITNSARNKKIAVFLDYDGTLSPIVDDPDQAIMSEEMRSAVRNVAKYFPTAIISGRSRNKVFELVGLTELYYAGSHGMDIKGPTNQTVASSHLK FVESSGKQGKEENLFQPAREFIPMIDEVFRTLVENTKEIKGAKVENHKFCTSVHYRNVDEKNWPVIAQRVHDILKDYPRLRLTHGRKVLEVRPEIEWDKG KAVEFLLESLGLSDRDNVLPVYIGDDRTDEDAFKVLKEGKRGCGILVSSVAKDSNAIYSLRDPTEVKRFLNSLVIWKRLEGGSGGMANRKTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10032244 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	9.2	0.7623
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10007049 [exp]	22.3	0.7566
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	36.3	0.7507
AT2G42780			unknown protein		Lus10010947 [exp]	47.8	0.7180
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	49.5	0.6946
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	81.5	0.6927
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	85.3	0.7000
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	100.7	0.7067
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	115.9	0.6743
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	187.4	0.6667

Compare expression of checked genes

Lus10032244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.