Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62640 542 / 0 KAS III, KASIII 3-ketoacyl-acyl carrier protein synthase III (.1.2) AT1G71160 46 / 3e-05 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024608 [exp] 743 / 0 AT1G62640 585 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10028925 [exp] 602 / 0 AT1G62640 592 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10004342 [exp] 586 / 0 AT1G62640 582 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10020662 [exp] 47 / 2e-05 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10041508 [exp] 42 / 0.0009 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120900 [exp] 563 / 0 AT1G62640 632 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.003G112101 [exp] 123 / 3e-33 AT1G62640 132 / 4e-37 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.002G141400 [exp] 44 / 0.0002 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 42 / 0.0008 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08545 [flax] [poplar] ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10032246 pacid=23168630 polypeptide=Lus10032246 locus=Lus10032246.g ID=Lus10032246.BGIv1.0 annot-version=v1.0 ATGGCAAATGTGTCTGGGTTTTTTAGTAGTAGTAGCTCTTCAGTTCCAACAAGCTTAAGGGGGAAGATGAAGTTTTCTAATGGGGTAATTGGATCTGGGT TCTGCTCGGCTAAGTTAATCCCCAGAAAAGGAATGGTCTTTGCATCCAGCAATGTTGAAGGTGTTGGCAAGGTTTCCTCTACTCAATCTCGGATGCCAAG GCTAGTAAGTCAAGGCTGCAAGCTTGTCGGATGTGGCTCAGCGGTTCCGAGACTAAAGATCACAAACGAAGATCTTGCCAAAATGGTCGACACTTCCGAT CAGTGGATCTCTGATCGCACAGGGATTCGTAATCGGCGAGTTCTTTCAGGTAAAGAAACCCTGATTTCTCTAGCATCCGAGGCAGCAAGGAAAGCGCTCG AGATGGCAGAGCTCGATGCCGATGATCTGGATATGATCCTATTGTGCACATCTACACCGGAAGATTTGTTCGGCAGTGCTCCACAGATCCAAAAGCAGCT TGGCTGCAAAGGACATACTTTGGCCTATGACATCACAGCTGCATGCAGTGGATTCATTATGGGGCTAGTCTCTGCTTCTTGCCACATTCGAGGCGGTGGA TTCAAAAACATCTTGGTGATTGGTGCTGATGCCCTATCTCGATACGTTGACTGGACCGATAGAGGAACCTGCATCCTCTTTGGTGATGCTGCTGGTGCTG TGGTTGTACAGGCTTGTGATGGCGAGGATGATGGTTTGTTTAGCTTCGACGTGAATAGCAATGGCGATGGCTCGAGACATTTAAACGCGTCGATCGGGCA AACCAAACCAGACCACGAACTCGGTTCCTCCAATGGATCGGCCGATGCAGACTTCCCTCCACGAAGATCCTCTTATTCGTGCATCAATATGAACGGGAAA GAGGTATACCGCTTCGCTGTGTCATCCGTGCCAGAGACTATTGAGTCTTCTCTCGAAAAGGCTGGCCTAACCTCAGCCAACATTGACTGGCTACTACTCC ACCAGGCTAACAAAAGGATAATCGATTCCGTCGCTGACCGGCTGAAACTCCCATCGGATAGGGTGATATCAAATCTTGCGAATTACGGTAACACGAGTGC TGCTTCGATCCCGTTGGCTTTGGACGAAGCGGTTCGGAGTGGTAAGGTGAAGCCAGGAGACACAATTGCAGCTGCTGGGTTTGGTGCTGGTCTCACATGG GGCTCTGCTATCATTAGATGGGACTGA
AA sequence Show only first row Show all	>Lus10032246 pacid=23168630 polypeptide=Lus10032246 locus=Lus10032246.g ID=Lus10032246.BGIv1.0 annot-version=v1.0 MANVSGFFSSSSSSVPTSLRGKMKFSNGVIGSGFCSAKLIPRKGMVFASSNVEGVGKVSSTQSRMPRLVSQGCKLVGCGSAVPRLKITNEDLAKMVDTSD QWISDRTGIRNRRVLSGKETLISLASEAARKALEMAELDADDLDMILLCTSTPEDLFGSAPQIQKQLGCKGHTLAYDITAACSGFIMGLVSASCHIRGGG FKNILVIGADALSRYVDWTDRGTCILFGDAAGAVVVQACDGEDDGLFSFDVNSNGDGSRHLNASIGQTKPDHELGSSNGSADADFPPRRSSYSCINMNGK EVYRFAVSSVPETIESSLEKAGLTSANIDWLLLHQANKRIIDSVADRLKLPSDRVISNLANYGNTSAASIPLALDEAVRSGKVKPGDTIAAAGFGAGLTW GSAIIRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10032246 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	6.8	0.8926
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	9.4	0.8825
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	13.0	0.8907
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	13.7	0.8838
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	20.1	0.8570
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	22.0	0.8758
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	22.0	0.8736
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	28.6	0.8753
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	28.7	0.8742
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018525 [exp]	31.0	0.8431

Compare expression of checked genes

Lus10032246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.