Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12140 300 / 1e-99 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G62600 296 / 3e-98 Flavin-binding monooxygenase family protein (.1) AT1G62620 291 / 2e-96 Flavin-binding monooxygenase family protein (.1) AT1G63370 290 / 6e-96 Flavin-binding monooxygenase family protein (.1) AT1G12200 290 / 6e-96 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G62560 283 / 4e-93 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G65860 280 / 5e-92 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62570 276 / 2e-90 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G12160 276 / 2e-90 Flavin-binding monooxygenase family protein (.1) AT1G63340 273 / 7e-90 Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024609 [exp] 429 / 3e-151 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10024598 [exp] 425 / 6e-149 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10015731 [exp] 228 / 2e-71 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 217 / 6e-67 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10032235 [exp] 68 / 3e-14 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10002402 [exp] 53 / 1e-07 AT1G21430 427 / 5e-149 Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 43 / 0.0002 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 43 / 0.0003 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 42 / 0.0006 AT1G04610 692 / 0.0 YUCCA 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121100 [exp] 332 / 2e-112 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 310 / 2e-103 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 298 / 5e-99 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 247 / 4e-79 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.007G028200 [exp] 47 / 6e-06 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 44 / 0.0001 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 43 / 0.0002 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 42 / 0.0002 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.006G248200 [exp] 42 / 0.0004 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 41 / 0.0006 AT1G04610 686 / 0.0 YUCCA 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10032247 pacid=23168484 polypeptide=Lus10032247 locus=Lus10032247.g ID=Lus10032247.BGIv1.0 annot-version=v1.0 ATGGGGTTCCGGGAGTACCCGTTCACGATCCGACCCGACCGCGACAGCAGGCGGTACCCGGGTCATCGGGAAGTGATGCTGTACTTGCAGGGCTACGCTA GGGAGTTTGGGATCGAGGAGATGGTGAGGTTTGAAAGAGAAGTGGTCAACGTTAGGTTCACGGTGACGAATAATTGGGAAGTTAAGTCAAGGAATTGTAA GGAGGAGAATGACAACGAAGGATTCGACGATGAGAGTTACGATGCCGTCGTTGTTTGTATCGGGCATTACACGGAGGTTCGCCCAGCTGAGATTCCTGGG ATACAGTCATGGCGAGGGAAGCAAATGCATAGTCACAATTATCGAACACCAGGGCCGTTTCAAAATCGAGTGGTAGTTGTGATAGGGAGTCAATCGAGTG CTGCAGATATATCAAGGGAGATCGCTGGGGTTGCAAAAGAGGTCCATCTCGCATCGAGATCAGTTGCTGACGAGATGTACGAACCGATGCCTGCATATGA CAATATGTATATCCATTCTATGATAGAGAGTGCCCATGAAGATGGATCGTTGAGCTTTCGAAAAGGGAAAGTCGTAGCTGCTGATATCATTCTACATTGT ACCGGGTACAAGTATCACTTTCCGTTTCTTGATACTCAAGGCATTGTGGCCGTGGATGACAACCGTGTTGGACCGTTATACAAACATGTCTTCCCTCCAG CTTTGGCTCCCGGGCTCTCATTTGTCGGGTTGCCATGGAAGAATACCATCACTGGCTTGCTTCTCGATGTGGGTGCTCTGGCTTTGAAGAATGGAGAAAG GGAATGTACAACTCGTCCAGGGAAGGCAGACGTCGCAGCCCAGAGGGATATCGCGACGAATGGGACGATCACGAGTTGA
AA sequence Show only first row Show all	>Lus10032247 pacid=23168484 polypeptide=Lus10032247 locus=Lus10032247.g ID=Lus10032247.BGIv1.0 annot-version=v1.0 MGFREYPFTIRPDRDSRRYPGHREVMLYLQGYAREFGIEEMVRFEREVVNVRFTVTNNWEVKSRNCKEENDNEGFDDESYDAVVVCIGHYTEVRPAEIPG IQSWRGKQMHSHNYRTPGPFQNRVVVVIGSQSSAADISREIAGVAKEVHLASRSVADEMYEPMPAYDNMYIHSMIESAHEDGSLSFRKGKVVAADIILHC TGYKYHFPFLDTQGIVAVDDNRVGPLYKHVFPPALAPGLSFVGLPWKNTITGLLLDVGALALKNGERECTTRPGKADVAAQRDIATNGTITS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	0	1
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	6.5	0.8738
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	8.7	0.8637
AT5G07950			unknown protein		Lus10021622 [exp]	9.6	0.8727
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	13.0	0.8612
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	21.7	0.8549
					Lus10023950 [exp]	24.3	0.8667
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	25.4	0.8423
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	33.1	0.8563
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	35.3	0.8614
AT5G65880			unknown protein		Lus10011719 [exp]	36.0	0.8407

Compare expression of checked genes

Lus10032247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.