Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12440 300 / 3e-105 APT4 adenine phosphoribosyl transferase 4 (.1.2) AT4G22570 299 / 3e-105 APT3 adenine phosphoribosyl transferase 3 (.1) AT1G27450 275 / 1e-94 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) AT1G80050 260 / 2e-89 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1) AT5G11160 259 / 4e-89 APT5 adenine phosphoribosyltransferase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024612 [exp] 366 / 1e-131 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1) Lus10004344 [exp] 329 / 5e-117 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1) Lus10018695 [exp] 295 / 2e-103 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10007757 [exp] 295 / 2e-103 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10002924 [exp] 262 / 3e-90 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1) Lus10001497 [exp] 259 / 4e-89 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121400 [exp] 327 / 4e-116 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1) Potri.014G017200 [exp] 285 / 2e-98 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Potri.006G255900 [exp] 270 / 1e-93 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1) Potri.018G026200 [exp] 266 / 4e-92 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10032249 pacid=23168689 polypeptide=Lus10032249 locus=Lus10032249.g ID=Lus10032249.BGIv1.0 annot-version=v1.0 ATGTCAGCTTACCGAGATGGAGAAGACGACCACCGTGTCAATGGCATCAAAACAAAGATTCGAGTCGTCCCCAATTTCCCTAAACCAGGTATTATGTTTC AGGATATTACAACTCTGCTACTGGACCCAAAGGCATTCAAGGACACCATTGATTTGTTCGTCGAGCGATACAAGGGCAAGACCATTTCAGTTGTTGCAGG GATCGAAGCACGAGGATTCATATTCGGGCCTCCCATTGCGTTGGCAATCGGCGCAAAGTTCGTTCCTTTAAGGAAGCCAAAGAAGCTCCCAGGTGAAGTC ATCTCAGAAGAGTATACCCTGGAGTACGGAAGCGACTGTCTCGAGATGCATGTTGGAGCAGTACAAAAGGGTGAACGTGCATTGGTGGTCGACGATCTGA TTGCTACCGGTGGTACCCTTTGTGCTGCCATGAACTTACTTGAACGTGCAGGAGCAGAAGTCGTTGAATGTGCATGCCTTATCGAGTTACCAGAGCTAAA GGGCCGTGAGAGATTGCATGACAAGCCATTGTACGTACTCGTGGAGTATCACTAG
AA sequence Show only first row Show all	>Lus10032249 pacid=23168689 polypeptide=Lus10032249 locus=Lus10032249.g ID=Lus10032249.BGIv1.0 annot-version=v1.0 MSAYRDGEDDHRVNGIKTKIRVVPNFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKTISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEV ISEEYTLEYGSDCLEMHVGAVQKGERALVVDDLIATGGTLCAAMNLLERAGAEVVECACLIELPELKGRERLHDKPLYVLVEYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	0	1
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	1.4	0.9134
AT5G40020			Pathogenesis-related thaumatin...		Lus10008304 [exp]	4.1	0.9240
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	6.6	0.8894
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10038556 [exp]	8.5	0.8795
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	11.6	0.8318
					Lus10030114 [exp]	11.7	0.8565
AT5G02640			unknown protein		Lus10009066 [exp]	11.9	0.9017
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030893 [exp]	18.1	0.8301
AT5G56980			unknown protein		Lus10025985 [exp]	21.7	0.8816
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	30.8	0.8485

Compare expression of checked genes

Lus10032249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.