Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62520 181 / 1e-55 unknown protein AT4G22560 172 / 2e-52 unknown protein AT4G12450 160 / 1e-47 unknown protein AT1G75710 71 / 1e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G27240 66 / 4e-12 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 66 / 5e-12 C2H2ZnF zinc finger protein-related (.1) AT2G29660 64 / 2e-11 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028927 [exp] 259 / 4e-86 AT4G22560 270 / 7e-91 unknown protein Lus10033148 [exp] 82 / 2e-17 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 78 / 2e-16 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 77 / 1e-15 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 67 / 3e-12 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10040685 [exp] 62 / 8e-11 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10018219 [exp] 61 / 4e-10 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10007625 [exp] 55 / 3e-08 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10025632 [exp] 53 / 1e-07 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121600 [exp] 227 / 1e-73 AT4G22560 258 / 5e-86 unknown protein Potri.003G111800 [exp] 224 / 2e-72 AT4G22560 263 / 3e-88 unknown protein Potri.001G249900 [exp] 80 / 7e-17 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.005G238300 [exp] 75 / 3e-15 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.009G043900 [exp] 73 / 2e-14 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.002G023200 [exp] 73 / 2e-14 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 64 / 2e-11 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 64 / 3e-11 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 62 / 1e-10 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.005G173400 [exp] 57 / 5e-09 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032250 pacid=23168696 polypeptide=Lus10032250 locus=Lus10032250.g ID=Lus10032250.BGIv1.0 annot-version=v1.0 ATGGCGACTGGCTGGGTGAAATCACTGCAATGTAAATCCAGAGCCTTCGAAGACGTCTTCAGCCCAGCTCCCAGAACCCTCAGTTGCCGGAAAAGTGCCC AGAACATCAAAGACGTGATCGACTCTGCCTCCACCGCCGATCGGAAGAAGAATAATCTCTCGAAGCCCAAATCCAGCCACCACCGGAGTTACAGGCCAGG CCCGAAGCCTAATCCGAAACCCGATTCCTTTCCTTCCCGGCTCCCGAATCTGTCCGGGTACCAGCTAAACAAGCCGGAGACGGCGGCGGCAATGTTCCCG GCGCTTAAGGAATTGCCGGAGGGGCACCCGTCGAGGAACGTGGTGGAGATAATCTTCCACACTAGCTGGAGCAGCAACAAGTCATTCTCGGGTCGAATCG AGATGATCTTCAAGGTCCAGAACGGGACCCGGACGACGACCCGGTTCGAGGAGTATCGCGAGGCGGTGAAGTACCGGGCTGGGTTGTCGTCGGGGATCGC CGGCGGTTGGGAGGAGAACGCCAGGTGCGTCGCCGACGGGAACGAGATGATGAGGTTCTACTGCCTCGGCCCGTCCACCGGCGACGCGTGGGTGTTCCCC GGAGGAGGGAAGGGCGGAGGCGGCGGCGCTGGGATATGTACTTACTCCGGCAGTGGAGGGGCCCACGAGAGCAGCGCTGGGGGTGGAGGAAAAGGGAGGC GGGCCATGCTGGTTTGTCGGGTTGTAGCGGGTCGGGTGTCGAGTAAACGAGTCGGATCGGACTCGGTCGGGTTTGACTCAGTGAGTGGGGACAACGGCGA GTTGTTGGTACTCGATAGTCGTGCGGTGTTGCCTTGCTTTCTTATCATTTATTACAAATTGTAA
AA sequence Show only first row Show all	>Lus10032250 pacid=23168696 polypeptide=Lus10032250 locus=Lus10032250.g ID=Lus10032250.BGIv1.0 annot-version=v1.0 MATGWVKSLQCKSRAFEDVFSPAPRTLSCRKSAQNIKDVIDSASTADRKKNNLSKPKSSHHRSYRPGPKPNPKPDSFPSRLPNLSGYQLNKPETAAAMFP ALKELPEGHPSRNVVEIIFHTSWSSNKSFSGRIEMIFKVQNGTRTTTRFEEYREAVKYRAGLSSGIAGGWEENARCVADGNEMMRFYCLGPSTGDAWVFP GGGKGGGGGAGICTYSGSGGAHESSAGGGGKGRRAMLVCRVVAGRVSSKRVGSDSVGFDSVSGDNGELLVLDSRAVLPCFLIIYYKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62520			unknown protein		Lus10032250 [exp]	0	1
AT1G78170			unknown protein		Lus10026738 [exp]	7.1	0.6807
AT5G03670			unknown protein		Lus10027723 [exp]	9.7	0.7295
AT5G14880			Potassium transporter family p...		Lus10012888 [exp]	15.6	0.6890
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	21.2	0.7060
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	26.0	0.6817
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	35.1	0.6153
AT4G00525			unknown protein		Lus10037852 [exp]	38.4	0.6224
					Lus10013458 [exp]	57.2	0.6333
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	59.6	0.6310
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10005750 [exp]	74.3	0.6360

Compare expression of checked genes

Lus10032250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.