Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22540 979 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 900 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT4G08180 728 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 697 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 676 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 500 / 3e-171 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G77730 164 / 7e-46 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 142 / 2e-36 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 140 / 1e-35 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 138 / 9e-35 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024613 [exp] 1416 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10028087 [exp] 733 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 717 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 687 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 662 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10025695 [exp] 620 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 554 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 148 / 5e-38 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 146 / 1e-37 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111600 [exp] 1075 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 1069 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.002G088000 [exp] 737 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 736 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 691 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 671 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.008G182766 [exp] 241 / 3e-73 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 153 / 6e-40 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10032251 pacid=23168486 polypeptide=Lus10032251 locus=Lus10032251.g ID=Lus10032251.BGIv1.0 annot-version=v1.0 ATGAGGGTGAAGGAAATGCACCCACTCTGCTGCATCTCCCTGGAGTCGGCCGGCGGCATCGGCGACCAGTCCCCAGAGCTCTCCGCGGCGTTGACCAGGG CGAGATCCCTCCCGGCGGCGCTGATGGGCGGATCTATGAGCAACGGCGCGCCGGAGGAGTCATCATCATCAGCGGCGACGGTGGCCGGAGTTCTCTACAA GTGGACCAATTACGGGAAAGGCTGGAGATCGCGGTGGTTCTTGTTACAGAACGGTGTTTTATCCTACTCCAAGATCCGCCGCCCCGAGAATCTGAATCTC CTCGCCCTGAACGAGGATGTGAGGCTGATCGGCGCGATTTCCACCAGCCGGCTGCAGAGGATGGACAGCCGGCGGAAGCCGGAGAAGAAGACCGTCGGCA TTGTTCATCTCAAGATTTCGTCGTTTCGGGAGAGCAAGTCAGATGACAGGAAGTTCTACCTATTTACAGCTACGAAGACGCTTCACTTGAGGACGGATTC AAAGAGGGACAGGGTAGCTTGGATTCAGGCATTGGTGTCTGCTAGGAACCTGTTTCCTTCGAGGTCGTTGAAAGACGGTATCTCCCTCACCGTGCCAAAG GATTTATCGGTCTCGACTGACAAGCTCAAGAAGCGGTTAGTCGAGGAAGGGGTGAATGAGAGCTTGGTTAAGGACTGCGAACATATTATGCTATCAGAAT TCTCCGAATTGAATGCTCAACTCAAGGTTGTTTGCGAAGAACGGTCGAGTTTGTTCGACACTCTAAGGCAATTGGAGGCTGCGAATATTGAAATCGAACA CTCGGGAATTCAAGATGGTCCATACCAGTTATCGAAGCACGAATTGTCAACTTTAGGACCTGGAAAGTACAGCGAATGTAGCACAACCGAATCATCAGAT GATATTGAGAAACCGGACCTGGAGGAAGTGTCAGATGAGGAGGAGCACTCTTTCCACGACACGAAAGATTACTTCACTGATGGGTCTCTAACAGCAGTTG CAGGAGGCCACTCAGCAAAGGATAATAGTAGGCAATCGAATCAATCTAATTGCAACGAGAAAATGCTCTCGCTATTTAACCCTGGATACCCTCGCGTTGA ACGGAGGAAGAAGCTTCCAACCCCGGTCGAAAAGGAGAAAGGAGTCAGCCTTTGGTCCATGATCAAGGACAATGTCGGGAAGGATCTCACTCGTGTTTGC CTCCCTGTCTATTTCAACGAACCAATATCCTCTCTTCAGAAGTGCTTCGAGGACTTGGAGTACTCCGATCTCTTGGACAAAGCCTACGAATACGGAAAAG CAGGGAACAGCTTGATGAGGATTCTGTACGTTGCTGCGTTTGCTGTGTCGGGTTATGCTTCCTCCGAGGGTCGCAACTACAAGCCGTTTAATCCTTTGAG AGGGTGGAGGTTTTGGGCTGACAGCGATATTCACTCGAAATTCTGGGGGCAATCGATTCAACTCGACCCTGTTGGAGTTCTGACACTCGAGTTTGACGAT GGTGAAAGATTCCAGTGGAGCAAGGTTACTACCGCGATTCGCAATCTGATTCTTGGAAAAGTATATTGTGATCACCACGGGATGATGAATATAACCGGAA ATCGGGATTATTCTTGCAAGTTAAAGTTCAAAGAGCAATCACTTCTTGAAAGAAATCCTCATCAGGTTAATGGGTTTGTAGAGGATGTTACTGGGAAGAA GGTTGCCACAGTGTCTGGAAAATGGGATGAAAGCATGCATTATAGCATCCTTGACATGCAAGGAAAGTCGAGGAATTCTAACCCGGCAACCAACTTGCTG TGGAAGAGTACAAAGCCACCTGTGAATCTCACCCGTTACAACTTGACATCGTTCGCCATAACAGTGAACGAATTAACACCAGGACTGAAGGAGAAGCTCC CTCCAACAGATTCCAGGATGAGACCAGACCAGCGGCATCTCGAAAATGGAGAATACGACAAGGCGAACTTAGAGAAACAGCGGCTGGAGAAGCGACAACG AATGTCAAGAAAGCTGCAAGAACATGGATGGAAACCGAGATGGTTCGAGAGAGAAGGCGACAATGGACCTTTTCGCTACAAAGGTGGGTACTGGGAAGCG CGAGATCGTAGCAACTGGGAAAGATGCCCTGACATATTCGGGGAGTTCAACGAAGATCTCTCCGAATCCAAGTGA
AA sequence Show only first row Show all	>Lus10032251 pacid=23168486 polypeptide=Lus10032251 locus=Lus10032251.g ID=Lus10032251.BGIv1.0 annot-version=v1.0 MRVKEMHPLCCISLESAGGIGDQSPELSAALTRARSLPAALMGGSMSNGAPEESSSSAATVAGVLYKWTNYGKGWRSRWFLLQNGVLSYSKIRRPENLNL LALNEDVRLIGAISTSRLQRMDSRRKPEKKTVGIVHLKISSFRESKSDDRKFYLFTATKTLHLRTDSKRDRVAWIQALVSARNLFPSRSLKDGISLTVPK DLSVSTDKLKKRLVEEGVNESLVKDCEHIMLSEFSELNAQLKVVCEERSSLFDTLRQLEAANIEIEHSGIQDGPYQLSKHELSTLGPGKYSECSTTESSD DIEKPDLEEVSDEEEHSFHDTKDYFTDGSLTAVAGGHSAKDNSRQSNQSNCNEKMLSLFNPGYPRVERRKKLPTPVEKEKGVSLWSMIKDNVGKDLTRVC LPVYFNEPISSLQKCFEDLEYSDLLDKAYEYGKAGNSLMRILYVAAFAVSGYASSEGRNYKPFNPLRGWRFWADSDIHSKFWGQSIQLDPVGVLTLEFDD GERFQWSKVTTAIRNLILGKVYCDHHGMMNITGNRDYSCKLKFKEQSLLERNPHQVNGFVEDVTGKKVATVSGKWDESMHYSILDMQGKSRNSNPATNLL WKSTKPPVNLTRYNLTSFAITVNELTPGLKEKLPPTDSRMRPDQRHLENGEYDKANLEKQRLEKRQRMSRKLQEHGWKPRWFEREGDNGPFRYKGGYWEA RDRSNWERCPDIFGEFNEDLSESK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	0	1
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	1.0	0.9453
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	4.9	0.8423
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	6.3	0.8292
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	6.8	0.8572
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	9.5	0.8336
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	9.7	0.8378
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	11.0	0.8128
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	11.0	0.8197
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	11.2	0.8266
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	13.4	0.8224

Compare expression of checked genes

Lus10032251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.