Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12110 671 / 0 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT2G26690 529 / 0 Major facilitator superfamily protein (.1) AT3G21670 461 / 2e-156 Major facilitator superfamily protein (.1) AT3G54140 438 / 9e-148 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 416 / 2e-139 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 405 / 7e-135 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 400 / 1e-132 Major facilitator superfamily protein (.1) AT1G62200 374 / 1e-122 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G59740 366 / 1e-119 Major facilitator superfamily protein (.1) AT2G02020 359 / 1e-117 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024614 [exp] 1022 / 0 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10039782 [exp] 523 / 2e-180 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 511 / 7e-176 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 482 / 3e-164 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 452 / 2e-153 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10030006 [exp] 452 / 3e-153 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 450 / 2e-152 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 448 / 2e-151 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 446 / 7e-151 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111500 [exp] 815 / 0 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.002G225500 [exp] 489 / 2e-167 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 474 / 1e-161 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 444 / 3e-150 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 440 / 2e-148 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 437 / 1e-147 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 432 / 1e-145 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 427 / 8e-144 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 425 / 8e-143 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 414 / 2e-138 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10032252 pacid=23168590 polypeptide=Lus10032252 locus=Lus10032252.g ID=Lus10032252.BGIv1.0 annot-version=v1.0 ATGAATCTGCAGTCTCAAACACAAAGCTCCACCCTACCAGATGCCTGGGACTACAAGGGCCGACCCGCCGTCCGATCGAGATCCGGCGGCTGGAGCAGCG CCGCCATGATTCTCGGCGGAGAGTTATGTGAGAGGCTGACGACGTTAGGCATCGCCGTTAACCTGGTGACTTACCTCACCGGAACTATGCATTTGGGCAA TGCCACCTCAGCCAACACCGTCACTAACTTCCTCGGTACCTCCTTCATGCTCTGCCTCCTCGGCGGCTTCCTCGCCGACTCCTTCCTCGGCAGGTACCTT ACTATTGCCATCTTTGCCACAGTTCAAGCAACGGGAATAACGATCCTGACAATCTCGACGATAATCCCATCTCTCCGGCCACCACCATGCCAAAACGGCG CCGTATGCATTCCAGCCAATAGCAAGCAACTCCTTGTCCTCTACCTAGCCCTCTACATGACTGCTCTAGGCACGGGCGGGGTAAAATCTAGTGTCTCGGG TTTCGGGTCGGACCAGTTTGATGACTCGGATCCAAGGGAGAAAAAACAGATGACTAAGTTCTTCAATTGGTTCTTCTTCCTTATCAACATCGGGGCATTG GCGGCTGTCACAGTCCTGGTGTACATCCAGGACCACCAGGGCCGTCGATATGGCTACGGGATCTGCACGATAGCTATCCTGACGGCTCTGATGACTTTCC TATCGGGTACCAAGAGGTACCGTTTTAAGAAGCTAGCGGGTAGCCCGTTGACCCAGATCGCGAGTGTCTACGTGGCGGCATGGAGGAAACGACACCTGGA GCTTCCGTCGGACCCCGGGATGTTGCACAATGTGGATGACATTGAGGAAGGGAGTAAGAAGAAGAAGCCAATGCTTCCTCACAGCAAGCAATTCAGGTTT TTGGACAGGGCGGCAATCAAGGACTCGCAATCCACGTCAGCAAACAAGTGGACACTATCAACCCTAACTGACGTGGAGGAGGTCAAAATGGTAATCCGGA TGCTACCCATTTGGGCAACCACCATCATCTTCTGGACGGTCTACGCCCAAATGACGACATTCTCCGTCTCCCAAGCCACCACCATGGACCGCCATATAGG CAGCTTCGAAATTCCCGCCGCCTCCCTTACCGTCTTCTTCGTGGGCAGCATCCTCCTCACTGTCCCGGTCTACGACCGGGCCATCGTCCCCGTGACACGT AGACTCCTCAACAACCCGCACGGCCTCACCCCTTTGCAGCGGATTGGGGTGGGCTTGGTGATGTCCATCATGGCCATGATTGCTGCAGCTCTGACAGAGC TGAAACGAGTTAGAACGGCACGAAACCATGGTTTGATCGATGACTCGACCACCATGGTCCCAATGAGCGTGTTCTGGTTGGTCCCGCAATTTTTCCTGGT TGGGTCGGGAGAGGCGTTCACGTACATTGGCCAGCTTGATTTCTTCCTCAGGGAGTGCCCTAAAGGGATGAAGACGATGAGCACGGGGCTCTTTCTGAGC ACGCTCTCGCTAGGGTTTTTCCTGAGCTCGTCGCTCGTAACGATCGTTCACAAGGCGACAACCAAGAAACCCTGGCTACCGGATAACATGAACAGAGGGA GGTTGTTCGATTTCTACTGGTTGTTGGCGATTCTGAGCGCGCTGAACTTTTTGGTGTACTTGGTATGTGCAAGGTGGTACGTTTACAAGGAGAAGCGCCT CACGGAAGAAGGGATCGTATTGGAAGAAGACGACGGGCCCGCCATGCATTGA
AA sequence Show only first row Show all	>Lus10032252 pacid=23168590 polypeptide=Lus10032252 locus=Lus10032252.g ID=Lus10032252.BGIv1.0 annot-version=v1.0 MNLQSQTQSSTLPDAWDYKGRPAVRSRSGGWSSAAMILGGELCERLTTLGIAVNLVTYLTGTMHLGNATSANTVTNFLGTSFMLCLLGGFLADSFLGRYL TIAIFATVQATGITILTISTIIPSLRPPPCQNGAVCIPANSKQLLVLYLALYMTALGTGGVKSSVSGFGSDQFDDSDPREKKQMTKFFNWFFFLINIGAL AAVTVLVYIQDHQGRRYGYGICTIAILTALMTFLSGTKRYRFKKLAGSPLTQIASVYVAAWRKRHLELPSDPGMLHNVDDIEEGSKKKKPMLPHSKQFRF LDRAAIKDSQSTSANKWTLSTLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMDRHIGSFEIPAASLTVFFVGSILLTVPVYDRAIVPVTR RLLNNPHGLTPLQRIGVGLVMSIMAMIAAALTELKRVRTARNHGLIDDSTTMVPMSVFWLVPQFFLVGSGEAFTYIGQLDFFLRECPKGMKTMSTGLFLS TLSLGFFLSSSLVTIVHKATTKKPWLPDNMNRGRLFDFYWLLAILSALNFLVYLVCARWYVYKEKRLTEEGIVLEEDDGPAMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	2.8	0.9649
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	3.2	0.9582
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	4.9	0.9645
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	5.4	0.9458
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	5.5	0.9613
					Lus10031026 [exp]	6.9	0.9475
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	6.9	0.9583
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	7.5	0.9559
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	7.7	0.9537
					Lus10002693 [exp]	10.0	0.9468

Compare expression of checked genes

Lus10032252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.