Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02930 86 / 5e-18 F-box/RNI-like superfamily protein (.1) AT5G02920 80 / 7e-17 F-box/RNI-like superfamily protein (.1) AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) AT5G38396 77 / 3e-15 F-box/RNI-like superfamily protein (.1) AT1G52650 75 / 1e-14 F-box/RNI-like superfamily protein (.1) AT3G28410 72 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G02700 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT4G14096 68 / 3e-12 F-box/RNI-like superfamily protein (.1) AT1G51370 67 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G58920 67 / 4e-12 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024617 [exp] 330 / 1e-114 ND 39 / 0.001 Lus10020292 [exp] 288 / 6e-95 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10024702 [exp] 264 / 2e-86 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 232 / 2e-73 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 219 / 3e-66 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10038935 [exp] 211 / 2e-65 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10029433 [exp] 198 / 4e-60 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10027244 [exp] 197 / 2e-59 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 186 / 5e-56 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 144 / 1e-39 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 129 / 6e-34 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 112 / 4e-28 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 104 / 5e-25 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 104 / 6e-25 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 104 / 6e-25 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 64 / 3e-11 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 62 / 2e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.001G395000 [exp] 59 / 3e-09 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 57 / 6e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10032255 pacid=23168467 polypeptide=Lus10032255 locus=Lus10032255.g ID=Lus10032255.BGIv1.0 annot-version=v1.0 ATGAAGAACAGAATTGACAGAATAAGTGACCTTACTGATGGTATTTTGCATCACATTCTATCATTTCTCGACACGAAATCTTCGGTTCGAAGCGGTGTTT TGTCGAAGAGGTGGAGGTGCGTGTGGAAAGATGTTCCCGTGCTCGATTTCTGCAAAGACTCGGTGAGCACTGAGTTAGGTTTGGAGCAACATGTGAACCA AGTTCTATCTCTTCGTTCTGACTGCAAAGTTAGCAAGATTACGATTGATTTTGGGATAGAAAAGAAGATGGATCTGTTTGATGGCATCATGAACTATGCT GCCTCGCATGGTGTTCACCACTTAACCTTACGTACTCATGGTTATGCGGATGACGGACCACTGCTCCAAACCTTTGAAGCAGTTTGCACTTGTTATCGAT CTCTGGAAATTCTAGAATTAGACTGTGTACGTTTCATTGAGACGGTTTCTGTATCGTGGTCTCGCTTGCAACAGCTCAAAGCTCTTACTCTGACTTGGTG CTACTTTGATGGATCACTTGATGGTTTTGCTGGTTTTCCCAAATTGGAGAACCTGAAGCTGATCAATTGCTCTCAAACCAGTCGTCCGACTCTTAAAATA CATGGAGCCCAGCTGCTTAACTTGGAGATACGCAGGGTATGCTTTATCAGTATTGAAATTGTCACTCCTAAGCTCCAATCTTTTTGCTTTGAGAATGTTT ACTACGTGCTACCAGATTTCTCCAAGTTAGAATTTCCTTATCTTAATCATGCTTACATCGACTTGTTGGGAAACGTTGCTGGTTATTTAGACGCTTGTTA TGACGAGGGAAGTGACTATCATCCCCTGTCGCCACTGATAGTCAAGAGGTGTGTAAACTTGTTCAATGGGTTGCACAATGTACAATCTCTCGACTTGCGG TTCGGCTCATTTGAGTTGCTGACGCGTACTTGTAATATGGTGAAACATCAACCTTCTCCTTTCAAGCGAATGAACTTCCTGAGGTTGCAGTATCTTGACG AAATTTCTAACCTGCCTTATCAAGTGATTCGTTACTATCTTGAAGGCTCTTCTACTGACGAAGAGAAACGTTTTACAGTTGATAAGGTACGCCGTTAG
AA sequence Show only first row Show all	>Lus10032255 pacid=23168467 polypeptide=Lus10032255 locus=Lus10032255.g ID=Lus10032255.BGIv1.0 annot-version=v1.0 MKNRIDRISDLTDGILHHILSFLDTKSSVRSGVLSKRWRCVWKDVPVLDFCKDSVSTELGLEQHVNQVLSLRSDCKVSKITIDFGIEKKMDLFDGIMNYA ASHGVHHLTLRTHGYADDGPLLQTFEAVCTCYRSLEILELDCVRFIETVSVSWSRLQQLKALTLTWCYFDGSLDGFAGFPKLENLKLINCSQTSRPTLKI HGAQLLNLEIRRVCFISIEIVTPKLQSFCFENVYYVLPDFSKLEFPYLNHAYIDLLGNVAGYLDACYDEGSDYHPLSPLIVKRCVNLFNGLHNVQSLDLR FGSFELLTRTCNMVKHQPSPFKRMNFLRLQYLDEISNLPYQVIRYYLEGSSTDEEKRFTVDKVRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10032255 [exp]	0	1
					Lus10000351 [exp]	3.5	1.0000
					Lus10002886 [exp]	4.9	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	6.0	1.0000
					Lus10014748 [exp]	6.6	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	7.4	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	8.1	1.0000
					Lus10023108 [exp]	8.8	1.0000
AT3G52470			Late embryogenesis abundant (L...		Lus10027133 [exp]	9.6	0.8202
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	9.8	1.0000
					Lus10024321 [exp]	9.9	1.0000

Compare expression of checked genes

Lus10032255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.