Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12510 101 / 9e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12520 101 / 9e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G62510 99 / 2e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12480 99 / 3e-25 PEARLI 1 1, PEARLI 1, pEARLI1 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G45180 94 / 6e-24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 95 / 8e-24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12470 94 / 2e-23 AZI1 azelaic acid induced 1 (.1) AT4G12490 94 / 2e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G12090 92 / 4e-23 ELP extensin-like protein (.1) AT5G46890 90 / 3e-22 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024619 [exp] 154 / 6e-47 AT4G12490 120 / 4e-35 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10028929 [exp] 112 / 6e-31 AT4G12520 147 / 9e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032257 [exp] 113 / 8e-31 AT4G12490 157 / 1e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024620 [exp] 112 / 3e-30 AT4G12490 150 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024626 [exp] 109 / 1e-29 AT4G12520 157 / 7e-50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004348 [exp] 109 / 1e-29 AT4G12520 154 / 4e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004346 [exp] 109 / 1e-29 AT4G12520 161 / 2e-52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024621 [exp] 110 / 2e-29 AT4G12490 147 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032261 [exp] 107 / 7e-29 AT4G12470 157 / 9e-50 azelaic acid induced 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158400 [exp] 107 / 4e-29 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 106 / 1e-28 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 103 / 1e-27 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121800 [exp] 91 / 9e-23 AT1G12100 143 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G256100 [exp] 88 / 1e-21 AT2G45180 116 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.014G059800 [exp] 84 / 3e-20 AT4G00165 127 / 1e-38 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.018G025900 [exp] 83 / 8e-20 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G122100 [exp] 79 / 9e-17 AT4G12480 96 / 7e-24 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008500 [exp] 76 / 1e-16 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.013G128800 [exp] 75 / 1e-16 AT4G12480 109 / 5e-31 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10032256 pacid=23168616 polypeptide=Lus10032256 locus=Lus10032256.g ID=Lus10032256.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAAACAAAATCAACCTTGCTTCTCATCCTTGCACTCAACATTCTCTTCTTCTCCATGATTTTCGCGAGCCCAAACCCTAAACCAACACATA CTCCAGTGCCAATACCAACTAACCCAAACCATACTCCTATACCTAGTCTGAGTCGTGCACCAACACCTAACCCAAACCCTACACCAACACCTAGTCCGGA TCGTGAACCTACACCTAACCCAAACCCTAAACAAACACCTACCCCTAATCCAAGTCCAGCATCAACACCTACTTCTAGTCCATATCTTGCACCAACACGC AACCCAAACCCTGATCCGACACCTACTAATCTGAACCTGAACCCAACACCTACTACACCTAGTCCAAATCATGCACCAACACCTACTCCTAGTCCAAATC CTGCACCAACACCTGGCCCAAACTCCAAACCAACACCTACTCCTAGTCCGACTGCACCAACACGTAGCCCAAACCCTTCGCCAACACCTACTAATCCTAA CCCGACACCAACCCCTAGCCCGAACCCTTCGCAAACACCTTCTAATCCTAACCCGCCACCAACTCCTAGCCCTTCGAGTGGGAAATGCCCCGTTAATGTA CTCAAGTTCCGTGTTTGTGGCAATCTACTCAACATCGGGAATAGGAACGCACCGGTTCGACCTTGTTGTAGTTTGATCAATGGACTTGTTGATTTTGATG CCGCTGTTTGCTTTTGCACTGCCATCAAAGACAACATTCTCGGCTTCAACGTCAATATTCCGGTTTCTTTCAGCTTGCTTCTCAATGCGTGCGGCAAGAG TGCTCCCTCTGGCTTCCAGTGTTCTTAA
AA sequence Show only first row Show all	>Lus10032256 pacid=23168616 polypeptide=Lus10032256 locus=Lus10032256.g ID=Lus10032256.BGIv1.0 annot-version=v1.0 MASKTKSTLLLILALNILFFSMIFASPNPKPTHTPVPIPTNPNHTPIPSLSRAPTPNPNPTPTPSPDREPTPNPNPKQTPTPNPSPASTPTSSPYLAPTR NPNPDPTPTNLNLNPTPTTPSPNHAPTPTPSPNPAPTPGPNSKPTPTPSPTAPTRSPNPSPTPTNPNPTPTPSPNPSQTPSNPNPPPTPSPSSGKCPVNV LKFRVCGNLLNIGNRNAPVRPCCSLINGLVDFDAAVCFCTAIKDNILGFNVNIPVSFSLLLNACGKSAPSGFQCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032256 [exp]	0	1
					Lus10011588 [exp]	2.2	0.7926
					Lus10003223 [exp]	3.5	0.6899
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020851 [exp]	7.3	0.6722
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10017306 [exp]	12.6	0.6905
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	21.8	0.6575
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	21.8	0.6851
AT1G18310			glycosyl hydrolase family 81 p...		Lus10038600 [exp]	22.0	0.6759
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	30.0	0.5958
AT5G13660			unknown protein		Lus10005963 [exp]	33.2	0.6566
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	35.2	0.6566

Compare expression of checked genes

Lus10032256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.