Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12510 73 / 2e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12520 73 / 2e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12470 67 / 1e-13 AZI1 azelaic acid induced 1 (.1) AT4G12480 67 / 1e-13 PEARLI 1 1, PEARLI 1, pEARLI1 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 67 / 2e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G62510 65 / 5e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12490 65 / 7e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G45180 64 / 1e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G12090 58 / 1e-10 ELP extensin-like protein (.1) AT4G12530 56 / 5e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004348 [exp] 89 / 4e-22 AT4G12520 154 / 4e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032261 [exp] 87 / 3e-21 AT4G12470 157 / 9e-50 azelaic acid induced 1 (.1) Lus10024626 [exp] 87 / 3e-21 AT4G12520 157 / 7e-50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032259 [exp] 84 / 2e-20 AT4G12520 133 / 2e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024622 [exp] 84 / 2e-19 ND 130 / 1e-38 Lus10024620 [exp] 79 / 1e-17 AT4G12490 150 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024621 [exp] 79 / 1e-17 AT4G12490 147 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032257 [exp] 78 / 1e-17 AT4G12490 157 / 1e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024623 [exp] 72 / 2e-15 AT4G12490 152 / 2e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158400 [exp] 83 / 7e-20 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 68 / 2e-14 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 67 / 4e-14 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.013G128800 [exp] 61 / 1e-11 AT4G12480 109 / 5e-31 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008500 [exp] 58 / 4e-10 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.006G008300 [exp] 57 / 8e-10 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G122100 [exp] 57 / 2e-09 AT4G12480 96 / 7e-24 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G025900 [exp] 55 / 2e-09 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G256100 [exp] 53 / 6e-09 AT2G45180 116 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G015500 [exp] 53 / 6e-08 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032258 pacid=23168585 polypeptide=Lus10032258 locus=Lus10032258.g ID=Lus10032258.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAAGCAAACTCAACGTTGGCTCTCTCCCTCGCGATCAACATTCTCTTCTTCTCCATGGTCTCTGCACATTGCGACTGCCCAAACCCTACTC CTAACCCGAACCCGAAGCCCACACCAACACCCCGAACCCCAAACCCTACACCAACTCCGAGCTCTTCAAGTGGGAAATGCCCCATCGATACACTCAAGTT GGGTGTTTGTGCTAATGTGCTTGGAAATTTGCTCAATATTATAATTGGAAGCACACCGGCCAAACCTTGTTGTAGCTTGATTAGTGGACTTGCTGATCTC GATGCTTCTTCGCCGTTAACACATCTGCTGCCGCCATCATCCTCCCAATCATCCATCACCGTCTTCACCAAATCGCATCAACACCCTTCGTCGTCCTCCT GTCTCCAAGCACCATCCACTGCTATCATCCGCTTAAATCATCTCACATCGTCACCATCATCATCTACTGTCGTCACGAACCGTCAATCACCACCCATTAT CGCTGCCATCACCATGCATCCCCCGCCACGACAATTGAGACTCCTGCCGACACATCAACTCGTGAATGCTAGCGTGACTCAGCCCAGACAGGATCAACCG TCCCAGCAGCGCGGATCAGGGGCTCGGCGGCCAGCACCTCCGACGATGCAACCGCCAATCAGTGTCACTCCACTGACGGATGCTCCCGCGACGGCTTCAC CAGAGATCCTGATTCCCTCGGTGTTTGCATTATCCTGA
AA sequence Show only first row Show all	>Lus10032258 pacid=23168585 polypeptide=Lus10032258 locus=Lus10032258.g ID=Lus10032258.BGIv1.0 annot-version=v1.0 MASKANSTLALSLAINILFFSMVSAHCDCPNPTPNPNPKPTPTPRTPNPTPTPSSSSGKCPIDTLKLGVCANVLGNLLNIIIGSTPAKPCCSLISGLADL DASSPLTHLLPPSSSQSSITVFTKSHQHPSSSSCLQAPSTAIIRLNHLTSSPSSSTVVTNRQSPPIIAAITMHPPPRQLRLLPTHQLVNASVTQPRQDQP SQQRGSGARRPAPPTMQPPISVTPLTDAPATASPEILIPSVFALS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	0	1
					Lus10016931 [exp]	3.9	0.7905
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	5.9	0.8111
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	15.3	0.7620
AT2G35612			unknown protein		Lus10034745 [exp]	15.7	0.7487
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	21.5	0.7072
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	22.6	0.7838
					Lus10028109 [exp]	47.9	0.7296
AT3G57990			unknown protein		Lus10000401 [exp]	60.7	0.6616
AT5G16460			Putative adipose-regulatory pr...		Lus10026836 [exp]	65.1	0.6441
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	72.8	0.7135

Compare expression of checked genes

Lus10032258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.