Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62500 130 / 4e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G10940 97 / 2e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22142 96 / 5e-22 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G15160 86 / 3e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22120 86 / 3e-19 CWLP cell wall-plasma membrane linker protein (.1) AT4G12470 63 / 3e-12 AZI1 azelaic acid induced 1 (.1) AT4G12480 62 / 2e-11 PEARLI 1 1, PEARLI 1, pEARLI1 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12490 62 / 2e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G62510 61 / 2e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 61 / 3e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028930 [exp] 131 / 2e-37 AT1G62500 141 / 4e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004349 [exp] 118 / 3e-32 AT1G62500 134 / 5e-38 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010482 [exp] 92 / 8e-24 AT3G22142 162 / 5e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10003801 [exp] 95 / 1e-22 AT3G22142 168 / 7e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010479 [exp] 91 / 3e-21 AT3G22142 168 / 3e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10027704 [exp] 87 / 1e-20 AT2G10940 135 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10001493 [exp] 72 / 7e-16 AT1G62510 111 / 2e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10003802 [exp] 72 / 2e-14 ND 127 / 5e-33 Lus10010480 [exp] 69 / 4e-14 ND 127 / 3e-34
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111300 [exp] 123 / 6e-34 AT1G62500 125 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G065500 [exp] 110 / 1e-29 AT2G10940 147 / 8e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.018G126000 [exp] 108 / 2e-27 AT2G10940 109 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.006G008500 [exp] 96 / 3e-24 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.016G015500 [exp] 99 / 2e-23 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008300 [exp] 94 / 5e-23 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G135860 [exp] 86 / 7e-20 AT1G62500 75 / 7e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G025900 [exp] 70 / 5e-15 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 67 / 1e-13 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 64 / 8e-13 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032262 pacid=23168581 polypeptide=Lus10032262 locus=Lus10032262.g ID=Lus10032262.BGIv1.0 annot-version=v1.0 ATGGAGGCGGCGGCCACACTCCAACCCGCCCTAGCCCCGTCATTCCCCATCCTCCTCATCATGGTGGCGGTGGCGGCGGAGGTGGCAGTGGTGGAGGACA TGGAGGTGGTGGTACATGGGGGTGGCGGTGGTGGAGGACATGGAGGTGGCGGTGGTGGAGGACATGGAGGTGGTGGATCAGGAGGCAAAGGACATAATCC ACCGTCAATGGGCCCACCCATGCCACCCATAATCCTACCTCCGATCACAAATCCCCCGGTCAGACCTCCTCCGGTGGTCAACCCTCCACCATTCACAAAC CCTCCGTTCATCAACCCTCCTCCGATCATAAACCCGCCGGTGGGCAACCCCCCGCCGCTCCCCAAACAAGCACCNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNACCTCCGTTTCTCACCCCAGCGCCACCTTGCTCCAGCTGCCCGACCAGCGGTGGTGGTGGAGGCGGAGGAGGTGGCGGCGGGGG AGGCGGCGGAGGTGGAGGTACACCTCCATCAAAGCAACCAAAGTGTCCTATCAACGCGCTTAAGCTAGGCGCGTGCGTGGACGTGCTGGGAGGTTTGGTC CACATAGGGCTAGGGGATCCGGTCGAGAACGTCTGCTGCCCGGTTCTGCAAGGGTTGCTTGAGCTGGAAGCCGCCGTTTGCTTGTGCACAACGCTAAGGC TGAAGCTTCTGAATCTCAACATCTTCATTCCTTTGGCTCTTCAGGCTCTCATCACCTGCGGCAAGACTCCTCCACCTGGCTTCGTCTGTCCTCCTCTCTG A
AA sequence Show only first row Show all	>Lus10032262 pacid=23168581 polypeptide=Lus10032262 locus=Lus10032262.g ID=Lus10032262.BGIv1.0 annot-version=v1.0 MEAAATLQPALAPSFPILLIMVAVAAEVAVVEDMEVVVHGGGGGGGHGGGGGGGHGGGGSGGKGHNPPSMGPPMPPIILPPITNPPVRPPPVVNPPPFTN PPFINPPPIINPPVGNPPPLPKQAXXXXXXXXXXXXXXXPPFLTPAPPCSSCPTSGGGGGGGGGGGGGGGGGGTPPSKQPKCPINALKLGACVDVLGGLV HIGLGDPVENVCCPVLQGLLELEAAVCLCTTLRLKLLNLNIFIPLALQALITCGKTPPPGFVCPPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	1.4	0.9731
					Lus10042887 [exp]	2.0	0.9721
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	2.4	0.9669
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	4.5	0.9619
AT5G54970			unknown protein		Lus10032643 [exp]	4.6	0.9508
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	7.3	0.9538
AT1G65900			unknown protein		Lus10007381 [exp]	7.5	0.9489
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	10.2	0.9387
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	10.7	0.9552
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	13.6	0.9152

Compare expression of checked genes

Lus10032262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.