Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05530 54 / 3e-09 RING/U-box superfamily protein (.1) AT3G19950 54 / 3e-09 RING/U-box superfamily protein (.1) AT1G74620 54 / 3e-09 RING/U-box superfamily protein (.1) AT1G55530 54 / 5e-09 RING/U-box superfamily protein (.1) AT5G56340 54 / 6e-09 ATCRT1 RING/U-box superfamily protein (.1) AT5G15820 52 / 2e-08 RING/U-box superfamily protein (.1) AT4G12140 51 / 2e-08 RING/U-box superfamily protein (.1) AT1G65040 52 / 3e-08 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G13430 51 / 3e-08 RING/U-box superfamily protein (.1.2.3) AT3G16090 51 / 5e-08 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024629 [exp] 213 / 5e-72 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10020258 [exp] 59 / 1e-10 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 56 / 1e-09 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10013397 [exp] 54 / 6e-09 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10040389 [exp] 53 / 1e-08 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10023477 [exp] 53 / 1e-08 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10012819 [exp] 50 / 6e-08 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10008874 [exp] 51 / 7e-08 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10037170 [exp] 50 / 7e-08 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074014 [exp] 57 / 3e-10 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 55 / 1e-09 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 54 / 5e-09 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 53 / 1e-08 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 53 / 1e-08 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 51 / 1e-08 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 52 / 2e-08 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 52 / 2e-08 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 52 / 3e-08 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 51 / 3e-08 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10032265 pacid=23168506 polypeptide=Lus10032265 locus=Lus10032265.g ID=Lus10032265.BGIv1.0 annot-version=v1.0 ATGGCAATGTCATACTTCCCCTCCTTCATCGCACTCGATCCGGATGACGACGACGACGACCAACCCGAACCCGAAGAGGATCTCTACAACAACGGCACTA TTATTCCTCATCTTCCCATGGCGACTGACGATATGCCGCCGAAACGTCGCCTCCAGCCGCTGTTCGACGGCCACCTGGACGACGTGACGTCGTTCACCAC CGAGGAACTACTGGACCCCAACTTGGACTGCTCCGTTTGTCTGGACAGTATCCAGTACAGCAACGACGACTACCCCGTGGGGTCAACGTCCGTGAAGAAG CTGGCGTGCTGCCACGTGTTCCACGAGGATTGCATCCGCCGCTGGCTCGCCGTGAAAGCTTCTTGCCCTCTGTGCCGCCTGCCCGTACCCTCCGTTGGTG GGACCTCCGCATTACGGAGCTTTTTGTTTAGATGGCTGTGTGTTGATTCTTGA
AA sequence Show only first row Show all	>Lus10032265 pacid=23168506 polypeptide=Lus10032265 locus=Lus10032265.g ID=Lus10032265.BGIv1.0 annot-version=v1.0 MAMSYFPSFIALDPDDDDDDQPEPEEDLYNNGTIIPHLPMATDDMPPKRRLQPLFDGHLDDVTSFTTEELLDPNLDCSVCLDSIQYSNDDYPVGSTSVKK LACCHVFHEDCIRRWLAVKASCPLCRLPVPSVGGTSALRSFLFRWLCVDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19950			RING/U-box superfamily protein...		Lus10032265 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	6.0	0.7544
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	6.4	0.8387
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	9.3	0.7636
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	12.0	0.7829
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	19.1	0.7535
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	25.0	0.7331
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	26.3	0.7180
AT5G13660			unknown protein		Lus10005963 [exp]	28.3	0.7149
					Lus10006164 [exp]	30.0	0.7149
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	31.6	0.7149

Compare expression of checked genes

Lus10032265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.