Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63650 434 / 2e-145 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 434 / 1e-144 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00480 200 / 1e-56 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G09820 191 / 2e-53 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 107 / 4e-24 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 94 / 8e-20 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 93 / 2e-19 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 91 / 7e-19 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 90 / 1e-18 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 87 / 1e-17 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024631 [exp] 1110 / 0 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10004574 [exp] 103 / 7e-23 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 97 / 3e-21 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 98 / 5e-21 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 94 / 1e-19 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 88 / 4e-18 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030212 [exp] 83 / 5e-17 AT4G00870 135 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005966 [exp] 85 / 7e-17 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030243 [exp] 83 / 3e-16 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103600 [exp] 561 / 0 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 560 / 0 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G159400 [exp] 402 / 6e-132 AT5G41315 483 / 2e-163 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 389 / 1e-126 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 224 / 5e-64 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 223 / 1e-63 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 100 / 5e-22 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 99 / 7e-22 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 97 / 6e-21 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 95 / 2e-20 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032267 pacid=23168593 polypeptide=Lus10032267 locus=Lus10032267.g ID=Lus10032267.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGGAACATCAACAAACAACTTGCTCTTGCTGTAAGGAACATCCAATGGAGCTATGCAATCTTCTGGTCCATTTCAGCTGAACAGCCTGGGG TGTTGAGCTGGGGAGATGGGTACTACAATGGAGATATAAAGACAAGGAAAACTGTCCAAACAATGGAAGTTGAAACAGACAGTCAGTTCGGATTGCAGAG AAGTGAGCAACTCAGGGAACTCTATCAGTCTCTCTCGTCTGGTGAGGCCAATCCACAATCCAGGAGGCCCTCTGCAGCATTGTCCCCGGAAGATTTGACT GATACTGAGTGGTATTATCTGGTCTGCATGTCTTTCATGTTCAACGTTGGCCATGGCTTGCCTGGGAGGTCATTGGCAAATAGCCAGCAGATTTGGCTGT GCAATGCTCATTCTGCTGATTGCAAAGTCTTCACTCGTTCTCTCCTGGCTAAAACTGTTGTGTGCTTTCCGATTCTAGGAGGTGTCTTGGAGATTGGCTC AACTGAGAACGTTTCAGAGAACTACAGCCTGATTCAGCAGATCAGAAGTTTGTTCTTGGACAATCCGGACCCATTGACATCAGAAAACTGGAATACAAAA CAAGATGAAGAGCTTGAAAAGATCGTTATGGAAGCTAGACTTGTTCCAGGAGTTGAATGTGAGGAATTGGAGATGGATGTTTCCCCTTATTGCAGCTCGA ACAATGAAGGTGCTGAGGATTCATTCATCGTTGAAGGGATAGTCTGTGAAGATGATGCGGCTGCTGAAGCTTCCCAGGTGGAAAGTTGGCTTGTGATGGA TGAAAATCTCAGTCCCGGTGTGAACCATTCCCTAAATTCTAGTGAATCCATATCTCAAACCGTTGCAGATCCCGAAAAGTTAGTGACTTTTCCAAGCCAT GATTCGGAGGCTTGCAACTGTGTAAAATTTGCTGCTCCGTGCCTCCTTCCAAGTGATGATTTGCATTATCAAAGTGCTCTCTCTTCAATATTCAAGACTT CACATCCATTGATGCTCGGACCACGCCATGGAAACCTTCGTCAAGAATCCAGTTTCGTCAGCTGGAAGAAGGTGGGACAGAGAGTAGTGAGATGTGGAAC CCAGCAAAGTATGTTAAAGAAGATTTTGTTTGATGTTCCACAAAATCACATCTATTTCTACTCCAGAGCCCCAGAAAATGGTTCAATGGATGGTGTGTTG AGATCAGAGGCCTGTAAATATGGCACGGATCACATTTCATCTGCGAGGAAACAAAGAGAATTACTTGATCAAAAGTTCATGATTCTCAAGTCAATAGTTC CTTCAGTCAACAAGGTTGATGAGGTATCCATACTAGACGAGACGATCGAGTACCTTCAAGAACTTGAAAGAAGAGTCGAGCAGCTGGAATCACGGCTAGA GAAAACTGACTCAGAGGTAAGAACAGAAAGGAGACACCAAAGAAGTTCAGAGAGAACATCTGATAACTATGGGAACATCAATAGAAATGGAAACGCCAGA AGGATAGTTGGGAACAAGAGGGCAAAACCATCCGAAATCGACTCAACGAGACCGAAGATCGAGCCCAATGTTGCATCTGATGGTAGTCAATCTGTTGTGA AAAATGTGACTGTCAGCACGAACATGAAAGACATCATAATCAAAGTCCAATGTCCATTGAGAGAAGGGATATTGCTTGAGATCATGGATGAGTTAGCCCG TCTCGGATTAGATTCTCACTCAGTTCAATCATCTACTACTAATGGAATTCTTTCCTTAACGATAGAATCCAAGCATAAAGGGTTAACTGGTACAGCAGCA GCATCACTAGGAGCAATCAAAAGGGAACTTGAAAGAGTTACCATGGAGAAGAACAACTGCCACCTAAACGATGTACTTGTAGATGGTTATTAG
AA sequence Show only first row Show all	>Lus10032267 pacid=23168593 polypeptide=Lus10032267 locus=Lus10032267.g ID=Lus10032267.BGIv1.0 annot-version=v1.0 MASGNINKQLALAVRNIQWSYAIFWSISAEQPGVLSWGDGYYNGDIKTRKTVQTMEVETDSQFGLQRSEQLRELYQSLSSGEANPQSRRPSAALSPEDLT DTEWYYLVCMSFMFNVGHGLPGRSLANSQQIWLCNAHSADCKVFTRSLLAKTVVCFPILGGVLEIGSTENVSENYSLIQQIRSLFLDNPDPLTSENWNTK QDEELEKIVMEARLVPGVECEELEMDVSPYCSSNNEGAEDSFIVEGIVCEDDAAAEASQVESWLVMDENLSPGVNHSLNSSESISQTVADPEKLVTFPSH DSEACNCVKFAAPCLLPSDDLHYQSALSSIFKTSHPLMLGPRHGNLRQESSFVSWKKVGQRVVRCGTQQSMLKKILFDVPQNHIYFYSRAPENGSMDGVL RSEACKYGTDHISSARKQRELLDQKFMILKSIVPSVNKVDEVSILDETIEYLQELERRVEQLESRLEKTDSEVRTERRHQRSSERTSDNYGNINRNGNAR RIVGNKRAKPSEIDSTRPKIEPNVASDGSQSVVKNVTVSTNMKDIIIKVQCPLREGILLEIMDELARLGLDSHSVQSSTTNGILSLTIESKHKGLTGTAA ASLGAIKRELERVTMEKNNCHLNDVLVDGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	0	1
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	1.0	0.9436
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	1.4	0.9121
AT1G76660			unknown protein		Lus10016050 [exp]	1.7	0.9112
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	2.8	0.8923
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003922 [exp]	3.5	0.8787
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	4.0	0.8708
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10033131 [exp]	4.9	0.8942
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	5.3	0.8977
					Lus10014328 [exp]	6.2	0.8439
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	7.3	0.8888

Compare expression of checked genes

Lus10032267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.