Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63660 910 / 0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) AT1G25155 47 / 2e-05 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 47 / 2e-05 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 47 / 2e-05 Glutamine amidotransferase type 1 family protein (.1) AT1G25220 47 / 2e-05 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT3G27740 47 / 3e-05 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT1G24807 44 / 8e-05 Glutamine amidotransferase type 1 family protein (.1) AT5G57890 43 / 0.0004 Glutamine amidotransferase type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024632 [exp] 1088 / 0 AT1G63660 909 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128200 [exp] 968 / 0 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Potri.010G102200 [exp] 51 / 7e-07 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G138800 [exp] 50 / 2e-06 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00958 [flax] [poplar] GMP_synt_C GMP synthase C terminal domain CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10032268 pacid=23168562 polypeptide=Lus10032268 locus=Lus10032268.g ID=Lus10032268.BGIv1.0 annot-version=v1.0 ATGGATCCAAAGGCAGTGAAATCCGACTTGGTCCTAATCCTCGACTACGGCTCCCAATACACCCACCTCATCACCCGCCGGATTCGTGCTCTCAGCATCT TCTCCCTCTGCATTTCGGGAACTTCCACTCTCGACGCCATAACTTCCCTCAACCCCAAGGTCGTCATCCTCTCCGGAGGCCCGCACTCCGTCCATACGGC TGATTCCCCGAGCTTCGCTGCCGGGTTCCTCGACTGGGCTCTGGAGAACGGCGTGTTCGTATTGGGGATCTGCTATGGGCTGCAGCTGCTTGTGCAGAGG CTGGGTGGGGAAGTTAAGGTTGGGGATGCGCAGGAGTATGGGAGGATGGAGATTGAAGTTGTGGGGAATTTGGGGATTTTTGGGGATAAGAAGGTTGGGG ATAAGCAGGTGGCGTGGATGAGCCATGGAGATGAGGCGGCTAGGTTGCCTGAAGGGTTTGAAGTTGTGGCGAAGAGCCAGCAAGGTGTTGTTGCTGCTGT TGAGAATCGGGAGAAGAGGCTTTACGGGCTGCAGTACCACCCTGAGGTGACTCATACGCCTGAGGGGATGGAAACATTGAGACATTTGCTGTTTAATATC TGTGGAGTGGCAGCTGGTTGGAACATGGAAGATGTGTCCGAGGAAGAGATCAAGGCGATCAAAGGAACAGTAGGACCTGAAGATCACGTCATATGTGCGT TGTCGGGTGGTGTGGATTCCACTGTTGCAGCTACGCTTGTTCATAAGGCGATTGGTGACAGGCTTCATTGCATTTTTGTTGACAATGGTCTTTTGAGGTA TAAGGAGAGAGAACGTGTGATGGAAACATTCGAGAAGGATCTTCATCTGCCTGTTACTTGTGTTGATGCATCCGAACAGTTTCTCAGTCATCTGAAAGGT GTGACGGATCCTGAGGCGAAAAGGAAGATAATTGGGAGGGAATTCATCAACATCTTTGATGTTTTTGCCCATGATTTGGAGAAGAAGCTAGGAACTAAAC CCGCTTACCTTGTACAAGGAACTTTGTATCCTGATGTCATTGAATCCTGCCCTCCTCCCGGGTCTGGAAGAAGTCACTCTCACACGATCAAGAGTCATCA TAATGTTGGAGGGCTTCCGAAGGACATGAAGTTGAAGCTAATTGAGCCTCTTAAGCTTCTATTCAAAGATGAGGTCCGACAATTAGGAAAGATCTTGGAT GTTCCTGTGGGATTCTTAAAGCGCCATCCTTTCCCTGGACCTGGTCTTGCTGTAAGAGTGTTGGGTGATGTAACTGAGGGCAATGCTTTAGATATCCTTC GCCTGGTGGATGAGATTTTCATCCAGTCCATCAAGGATGCCGGCCTATACGATACGATCTGGCAAGCTTTTGCAGTTTTCTTGCCTGTGAGAAGTGTTGG AGTTCAAGGAGATCAAAGAACTCACTCTCATGTTGTTGCCCTTAGAGCTGTTACAAGTCAAGATGGCATGACAGCAGATTGGTACTACTTTGAACACAAG TTCCTCGACGATGTCTCGCGCAAAATCTGCAACAGTGTACGCGGAGTGAACCGAGTTGTTCAAGATATTACATCAAAGCCTCCATCAACCATCGAGTGGG AGTGA
AA sequence Show only first row Show all	>Lus10032268 pacid=23168562 polypeptide=Lus10032268 locus=Lus10032268.g ID=Lus10032268.BGIv1.0 annot-version=v1.0 MDPKAVKSDLVLILDYGSQYTHLITRRIRALSIFSLCISGTSTLDAITSLNPKVVILSGGPHSVHTADSPSFAAGFLDWALENGVFVLGICYGLQLLVQR LGGEVKVGDAQEYGRMEIEVVGNLGIFGDKKVGDKQVAWMSHGDEAARLPEGFEVVAKSQQGVVAAVENREKRLYGLQYHPEVTHTPEGMETLRHLLFNI CGVAAGWNMEDVSEEEIKAIKGTVGPEDHVICALSGGVDSTVAATLVHKAIGDRLHCIFVDNGLLRYKERERVMETFEKDLHLPVTCVDASEQFLSHLKG VTDPEAKRKIIGREFINIFDVFAHDLEKKLGTKPAYLVQGTLYPDVIESCPPPGSGRSHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGKILD VPVGFLKRHPFPGPGLAVRVLGDVTEGNALDILRLVDEIFIQSIKDAGLYDTIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHK FLDDVSRKICNSVRGVNRVVQDITSKPPSTIEWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	0	1
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	1.0	0.9578
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	1.4	0.9575
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	2.0	0.9199
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	4.5	0.9191
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	5.7	0.9226
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	6.3	0.9101
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	8.4	0.9130
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	8.8	0.9068
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	8.8	0.9186
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	9.7	0.8989

Compare expression of checked genes

Lus10032268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.