Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11400 75 / 1e-14 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT2G46040 72 / 9e-14 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024636 [exp] 274 / 5e-89 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 52 / 4e-07 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 49 / 3e-06 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129800 [exp] 124 / 3e-31 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 75 / 1e-14 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 72 / 8e-14 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032271 pacid=23168534 polypeptide=Lus10032271 locus=Lus10032271.g ID=Lus10032271.BGIv1.0 annot-version=v1.0 ATGGCAGGGTGGTCAATGTTCGCAAATGGGACTGGTTTAGACAGTGATACTGTTAACCAAAAGCAGAAGGGTATATTAGATGCTCTGAAGGATATTGATG TTGTGAATAGTTGTGATGATGTTGATGTGGAACTGAGGTCCCTGTTTACTCAGGCTCTTTCAGTCTTTCGGACTAAGTTTGTTCAGGCATCGCTTGGCAA TGGGGAAACGGTGGATTTGTTCAAGCTCTTCTGTGTTGTTGGTGAGAGAGGAGGGTTTGATTCGGTTGAGGGTTGCTGGAACTATGTGGTGGAAGAATTA GGGTTGGATCCCCGATTATCGGGTTGTGTTAAATTGGTCTATTTCAGCTTCTTGTACAACATGGAAAGGTGTCTGATGAAGAACTGTAGAGATGATGGAG AATTAGGGCATAGCGAAAGTGAGCACGGCAGCAATTTCAGTACTTTCTCTCTTGATTTGGGGACCAAGCTTAGGAGCTTTTTAGCTGATGGTAAAATGGG TAATGAAATGGGCAAGAATCTAGGTCTAGATGCTGGGGAAAGTAGATTAGGTATGTTGGGGGGCACTCCAAACACGTGCCGCCCGGTTAATGGCTTTTAT GTTAGGAATAACGATGATGATGACGAAAATGTTGTTGTTGGCGGTTACGAGAACTATGGCGACAATGCAGTTGATCCAGCAGTCAACACACACACTGACC TTGAAGGTGAGAAAAAGTCGCGTAAGAGAAAACGGGTATCCATGTCTAAGATACTTAGCTGGATGACTCAGGTTGCAGCATGTCCTTCCAATCATGAAGT CGTCTCCATGGATGGGAAAGGAAATGAGTTGAAGGCCTTGGCCATCGAAGCTCGTGATTTTCTGTCACGTAAAACTCGTTTCGATCTGAACACTGTCCAG TGTGGCTCAAAGGTGTGGTGCATTTCTGTGAAACTTCGTTATTTCTTTCAATCTTCAGTTATTCATTGA
AA sequence Show only first row Show all	>Lus10032271 pacid=23168534 polypeptide=Lus10032271 locus=Lus10032271.g ID=Lus10032271.BGIv1.0 annot-version=v1.0 MAGWSMFANGTGLDSDTVNQKQKGILDALKDIDVVNSCDDVDVELRSLFTQALSVFRTKFVQASLGNGETVDLFKLFCVVGERGGFDSVEGCWNYVVEEL GLDPRLSGCVKLVYFSFLYNMERCLMKNCRDDGELGHSESEHGSNFSTFSLDLGTKLRSFLADGKMGNEMGKNLGLDAGESRLGMLGGTPNTCRPVNGFY VRNNDDDDENVVVGGYENYGDNAVDPAVNTHTDLEGEKKSRKRKRVSMSKILSWMTQVAACPSNHEVVSMDGKGNELKALAIEARDFLSRKTRFDLNTVQ CGSKVWCISVKLRYFFQSSVIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032271 [exp]	0	1
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	23.0	0.7556
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	69.6	0.7586
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	123.8	0.7074
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	147.6	0.7028
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	207.1	0.7090

Compare expression of checked genes

Lus10032271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.