Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11400 188 / 3e-55 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT2G46040 146 / 7e-40 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 113 / 5e-28 GYRB3 DNA GYRASE B3 (.1) AT1G13880 108 / 1e-26 ELM2 domain-containing protein (.1) AT2G03470 105 / 1e-25 MYB ELM2 domain-containing protein (.1.2) AT1G26580 99 / 4e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024636 [exp] 554 / 0 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 142 / 3e-38 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 140 / 2e-37 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10026655 [exp] 119 / 2e-30 AT1G26580 237 / 3e-72 unknown protein Lus10004658 [exp] 112 / 1e-27 AT1G26580 243 / 1e-74 unknown protein Lus10037097 [exp] 109 / 2e-26 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 105 / 3e-25 AT1G26580 253 / 1e-77 unknown protein Lus10000680 [exp] 104 / 3e-25 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 102 / 1e-24 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101800 [exp] 228 / 1e-72 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 230 / 2e-70 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 179 / 2e-51 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 178 / 5e-51 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 128 / 9e-34 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 127 / 3e-33 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 117 / 1e-29 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 111 / 2e-27 AT1G26580 280 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032272 pacid=23168642 polypeptide=Lus10032272 locus=Lus10032272.g ID=Lus10032272.BGIv1.0 annot-version=v1.0 ATGAATGGTGTTACCATTATGGCAACGGTTTCCTTTGCTCGTATTAAATCTTCTATAAACATGCAGGATCAGCAAAAGGTGGACTTGACCAGGCCTGAGG ATAAGTTGAGATTCACCAAGAGGCAGCTTGCATTACAACAATCTCAACCACCTTCATGTTATGTTCGTACTTGGAATGCTAAAGACATGAAGGATCGAGC TAATGCTGCTCTTGCTTTGCCCGTTACAAGAATGATGATCGGACTGAAGGACGAGCATATCCCAGTTCGAGTCCACTCTCGCTATCAGGTTACAGTCCCT AAATGGACCGGTGAGGTATATGAGAGCGAGGACAAGTGGCTAGGCACTAAAGTATGGCCTCTCCAAGATGCAGACGCTACTAGTAGAGAGCTGGTTCCCT CGAACTATACCATCGGAAAGGGAAGGACCGGTTTCTGCAGCTGCAAGGTTCCAGGATCGGTCTTATGTGTTCGTTTCCATATCGCCGAGAGGAGAATGAA ACTCAAGCTGGAGTTAGGGCCAGCGTTCTTCCGTAGTGGATTCACAGTAATGGGCGAAGAAGTGTCACTTAGATGGACTGCCGACGAAGAGAAGAGCTTT AAGAAGATGGTGAGGTGTAACCGTCCATCTCAAGATAAGAACTTTTGGGACTATGCTCATATTTTCCTCCCTGGGAAGACTAGGAGGGAGCTGGTCAGCT ATTACTTCAATGTGTTCCAACTCCAGCGGAGGAGTTATCAGAACCGAGCAACTCCGAATGACATCGACAGCGAGGACGACGAGAAACAGTTTGGATCGTT CACCGATGGTTTCGGAGGCCATGCTATTGAGGTTCGCAATGTGGATGATGTGGAGGAGACCATTTGTGCGCTGAACGAGCAGTGTACTAACTATACATTG ATATGA
AA sequence Show only first row Show all	>Lus10032272 pacid=23168642 polypeptide=Lus10032272 locus=Lus10032272.g ID=Lus10032272.BGIv1.0 annot-version=v1.0 MNGVTIMATVSFARIKSSINMQDQQKVDLTRPEDKLRFTKRQLALQQSQPPSCYVRTWNAKDMKDRANAALALPVTRMMIGLKDEHIPVRVHSRYQVTVP KWTGEVYESEDKWLGTKVWPLQDADATSRELVPSNYTIGKGRTGFCSCKVPGSVLCVRFHIAERRMKLKLELGPAFFRSGFTVMGEEVSLRWTADEEKSF KKMVRCNRPSQDKNFWDYAHIFLPGKTRRELVSYYFNVFQLQRRSYQNRATPNDIDSEDDEKQFGSFTDGFGGHAIEVRNVDDVEETICALNEQCTNYTL I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	0	1
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10009789 [exp]	8.9	0.7884
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	14.9	0.7753
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	22.0	0.7252
AT1G68570			Major facilitator superfamily ...		Lus10018838 [exp]	22.4	0.7398
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	22.8	0.7648
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	29.3	0.7770
AT1G26660			Prefoldin chaperone subunit fa...		Lus10030428 [exp]	38.5	0.7305
AT4G27380			unknown protein		Lus10037879 [exp]	40.0	0.7635
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	46.0	0.7665
AT1G67785			unknown protein		Lus10042077 [exp]	53.6	0.7618

Compare expression of checked genes

Lus10032272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.