Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63800 262 / 1e-90 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT5G41340 258 / 4e-89 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT2G46030 241 / 3e-82 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT1G64230 95 / 3e-25 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G56150 94 / 5e-25 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT3G08690 94 / 1e-24 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT4G27960 93 / 2e-24 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 92 / 3e-24 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08700 92 / 4e-24 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT5G53300 91 / 1e-23 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014763 [exp] 261 / 4e-90 AT1G63800 294 / 6e-103 ubiquitin-conjugating enzyme 5 (.1) Lus10024638 [exp] 257 / 1e-88 AT1G63800 229 / 2e-77 ubiquitin-conjugating enzyme 5 (.1) Lus10036372 [exp] 251 / 5e-86 AT1G63800 286 / 9e-100 ubiquitin-conjugating enzyme 5 (.1) Lus10002359 [exp] 247 / 4e-84 AT1G63800 275 / 5e-95 ubiquitin-conjugating enzyme 5 (.1) Lus10042136 [exp] 245 / 6e-84 AT1G63800 267 / 2e-92 ubiquitin-conjugating enzyme 5 (.1) Lus10009422 [exp] 96 / 2e-25 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10028700 [exp] 96 / 2e-25 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10022726 [exp] 94 / 6e-25 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 94 / 6e-25 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101900 [exp] 287 / 1e-100 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.003G129700 [exp] 278 / 5e-97 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.002G161000 [exp] 275 / 1e-95 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.014G086600 [exp] 270 / 8e-94 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.015G073400 [exp] 244 / 2e-83 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.019G083800 [exp] 97 / 3e-26 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.003G136200 [exp] 95 / 4e-25 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 94 / 5e-25 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.011G168200 [exp] 94 / 6e-25 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 94 / 6e-25 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10032274 pacid=23168603 polypeptide=Lus10032274 locus=Lus10032274.g ID=Lus10032274.BGIv1.0 annot-version=v1.0 ATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTCTTCGTGGAGTTCCATGGACCAAAAGACAGTCCTTACCAAGAAGGAATGT GGAAGATAAGAGTGGAATTACCAGATGCTTATCCTTATAAGTCTCCATCCATTGGATTTATTAACAAGATCTACCACCCAAACGTGGATGAAATGTCGGG TTCGGTTTGCTTGGATGTTATCAATCAAACTTGGAGCCCGATGTTTGATTTGGTGAATGTATTTGAAGTGTTTCTTCCTCAGCTTCTTTTGTACCCCAAT CCATCGGATCCTTTGAATGGAGAAGCTGCTGCTTTGATGATGCGTGATCGTACTGCTTATGACCAAAGAGTGAAAGAGTATTGCGAAAAGTACGCAAGGC CGGAGGACATTGGGGCAAAACCAGAAGATGAATCGAGCGAGGAGGAGCTGAGTGAAGCTGATGAATATGGCTCCGAGGATGATCAAATTGCAGGAAAAGC TGATCCCTGA
AA sequence Show only first row Show all	>Lus10032274 pacid=23168603 polypeptide=Lus10032274 locus=Lus10032274.g ID=Lus10032274.BGIv1.0 annot-version=v1.0 MMSDYKVEMINDGMQEFFVEFHGPKDSPYQEGMWKIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPN PSDPLNGEAAALMMRDRTAYDQRVKEYCEKYARPEDIGAKPEDESSEEELSEADEYGSEDDQIAGKADP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	0	1
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	1.0	0.9584
AT3G52220			unknown protein		Lus10039101 [exp]	1.7	0.9483
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	2.4	0.9550
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	3.2	0.9373
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	3.7	0.9415
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	4.2	0.9392
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	4.4	0.9283
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10026704 [exp]	4.6	0.9273
AT2G32760			unknown protein		Lus10016662 [exp]	4.7	0.9361
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	6.2	0.9343

Compare expression of checked genes

Lus10032274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.