Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23440 1198 / 0 Disease resistance protein (TIR-NBS class) (.1) AT5G56220 558 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024639 [exp] 1105 / 0 AT4G23440 831 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10024640 [exp] 659 / 0 AT4G23440 424 / 2e-140 Disease resistance protein (TIR-NBS class) (.1) Lus10029921 [exp] 50 / 6e-06 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 47 / 9e-05 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129600 [exp] 1337 / 0 AT4G23440 1332 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Potri.001G472200 [exp] 572 / 0 AT5G56220 1305 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G135700 [exp] 52 / 3e-06 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T126306 [exp] 45 / 0.0003 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.013G037599 [exp] 45 / 0.0004 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105201 [exp] 44 / 0.0006 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.T126506 [exp] 44 / 0.0006 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.008G220200 [exp] 44 / 0.001 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T126706 [exp] 44 / 0.001 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032275 pacid=23168555 polypeptide=Lus10032275 locus=Lus10032275.g ID=Lus10032275.BGIv1.0 annot-version=v1.0 ATGGACATTCGAGAAGATAGCTTGAAACCGGCCTTGTTACCACCATTAGCGACGCTAAAGACCGTGTCATCATCATCTTCAGCATTCTTTTCAGCAAATC AATCACCTTTCTTCTCACCAAGGTCACCAACTTGTCAAGTATCCGAATCGACAAGGTCTGACGCTAATTGCGACAGCATTATTAGCTCGACTTCAGGACT CCACGAGCCCGAGTCTTTGGTCAATGTTAGGGACGATACATTGTCACAAGTGTCGAGGGACCCTGGCATCGCTACTGATTACCAGAAGTTCGAGAGGATA ACATCCTCAACCGGCATATCCAACAGCAGTCCATCCGCCAGCAACAGCTTTTTCCACGAAAATGTATATCCGGTAGGGCCGAGAGAGAAGCATAGGAAGC ATGGTCGAGGCTATAGACCATCACCGGTTTCCTCTATCTCACTTTGCTCGAACAAGCTGAGGGGTTGTGATGTCTACATAGGTTTCCATGGCCGCAAGTC TTCTTTGCTGCGATTCACTGATTGGCTGCGTGCTGAGTTGGAAGGTCAAGGAGTGAGAACCTTCTTATCTGACCGAGCTCGATGCAAAAATTCTGGGGAG AGAGGGCTAGCTGAAAAAACAATGGATGTTTCGTCTTTCGGAATAATAGTCTTGACAAGGAAATGCTTCAGGAACTCTTACACCATTGAGGAGCTGAGGT TCTTTTCAGACAAGAAGAACTTAGTTCCCGTGTTTTTCGATTTGAGCCCCGGGGATTGCCTTGTTAGGGACATTGTTGAGAAGAGTGGGGAATTATGGGA CAAGCATGGAGGTGAGCTGTGGAATCATTATGGTGGGTTGGAGCAAGAGTGGAAAGAAGCTGTTAATAGCCTATCCCGAGTCGACGAATGGAAGCTGGAG GCTCAGGAAGGTAACTGGAGAGACTGCATACAGAGAGCCGTCACACTTCTGGCAATGCAGTTAGGAAGGAGAAGTGTTGTGGATAGAGTAACAAAGTGGA GGGAGAAAGCAGACAAAGAAGAGTTCCCCTTGCCACGAAACGAAATCTTCGTTGGCAGGAAGAAGGAACTCTCCGAGTTGGAATTCATGCTTTTCGGTGA TGTCTGTGGAGATACAGAACGAGATTATTTCGAGCTCAAGGCAAGACATCGAAGGAAAAAGGGATGGAATGTAGGGAAAAGGGAGAGTGGTAGTGATAAG TTTAAAGAGCCAGTGATATGGAAGGAGTCTGAGAAAGAGATTGAGATGCAAAGCAATAACTTGTTATTCCATCAGGTAAGGAGAAAACAAAACAGGAGAA GACGGTCTTCGAAGATTTCGTACGGAAAGGGAGTTGCTTGTGTCTCGGGGGAACCGGGTATTGGCAAAACGGAGCTTCTTCTCGAATTTGCGTACCGGTA TCACCAAAGATACAAAATGGTTCTGTGGATTGGAGGGGAAAGCAGGTATGTAAGGCAGAACTATCTCAACTTGTGGTCCTTTCTCGAAATCGATGTAGGA TTGGAGAATTCAGAGAAAACAAAAATCCGAAGCTTTGGAGATCAAGAGGAAGAAGCCATTTCCAGAATCAGGAAAGAGCTCATGAGAAACATACCCTTTC TTGTGATCATTGACAACTTGGAGAGTGAAAAGGATTGGTGGGATCAGAAGCTTGTTATGGATCTGCTTCCGGTTTTTGGAGGAGAAACACATATACTTAT ATCCACACGCTTACCTCGAGTGATGAACTTAGAACCTATGAAGCTCTCCTACTTGTCAGGTGTCGAGGCAATGGTGTTGATGCAGGGAACCATGAAGGAC TACTCGATTCCTGAAATCGATGCATTGAGAGCCATCGAGGAGAAAGTAGGACGGCTAACATTAGGGCTCGCCATAGTTGGAGCGATTTTATCTGAGCTAC CTATAAATCCAAGTAGGTTGCTCGACACTGTAAACAGAATGCCATTGAGGGAGATTCCATGGAGTAGTGGTAGAGAGACCAATCCACTTAGGAGAAACAC TTTCCTGCTACAACTATTCGAGGTATGCTTCTCGATTTTCGACCATGTGGATGGACCGAGAAGCTTGGCTAACCGGATGGTTCAAGCCAGCGGTTGGTTT GCTCCGGCTGCAGTTCCTGTATCCTTACTAGCCCTCGCAGCAAGCAAGATCCCCGAGAAAGATCGAGGCAAGAAAGCATGGAGACAGCTTCTCAGTTCGA TGAGCTGCGGTCTGGCATCATCGTATACGAAAAGATCCGAGGCAGAGGCATCATCTCTTCTCTTAAGGTTCAACATAGCAAGAAGCAGTACAAGGCCCGG ATATATTCATATCAACGAGCTCGTGAAGCTCTACTCTCGAAAGAAAGGAACTCCGGAAATCGCGCGAGCCATGGTTCGAGCAGTGTTGAACCGTGGTTCA ATATTCCATCACTCGGAACACATATGGTCGGCTTGTTTTCTAACATTCGGATTCGGGAACGATCCAAAGGCAGTCGAACTCCAAGTGCCTGAGTTACTAT ACATTGCCAAAGAAGTCATCCTGCCACTAGCGATCAGGACGTTCATAACGTTGTCTCGATGTAAAGCTGCGGTGGAGCTGCTACGTCTGTGCACTGATGC GCTGGAGGAAGCGGACCAAGCGTTCGTGACACCTGTCGAGAAATGGTTGGACAAGTCGTTGCTGTGTTGGAGGCCGATCCAGACGAATGCACAACTGAAT CCTTACCTGTGGCAGGAGCTGGCGCTAACGAGGGCCACGGTGCTCGAGACTCGAGCCAAGTTGATGCTGAGAGGAGGGCAGTTTGATGTCGGGGATGATC TGATAAAGAAGGCTATCTTTATCAGAGCATCTATCTGTGGAGAGAACCATCCGGATACTGTAGCTGCTAGAGAAACTCTGAGTAAGCTCAGCAGACTACT TGCTAAAGTTCAGACTCACAGCAACAGTCCACCCTAG
AA sequence Show only first row Show all	>Lus10032275 pacid=23168555 polypeptide=Lus10032275 locus=Lus10032275.g ID=Lus10032275.BGIv1.0 annot-version=v1.0 MDIREDSLKPALLPPLATLKTVSSSSSAFFSANQSPFFSPRSPTCQVSESTRSDANCDSIISSTSGLHEPESLVNVRDDTLSQVSRDPGIATDYQKFERI TSSTGISNSSPSASNSFFHENVYPVGPREKHRKHGRGYRPSPVSSISLCSNKLRGCDVYIGFHGRKSSLLRFTDWLRAELEGQGVRTFLSDRARCKNSGE RGLAEKTMDVSSFGIIVLTRKCFRNSYTIEELRFFSDKKNLVPVFFDLSPGDCLVRDIVEKSGELWDKHGGELWNHYGGLEQEWKEAVNSLSRVDEWKLE AQEGNWRDCIQRAVTLLAMQLGRRSVVDRVTKWREKADKEEFPLPRNEIFVGRKKELSELEFMLFGDVCGDTERDYFELKARHRRKKGWNVGKRESGSDK FKEPVIWKESEKEIEMQSNNLLFHQVRRKQNRRRRSSKISYGKGVACVSGEPGIGKTELLLEFAYRYHQRYKMVLWIGGESRYVRQNYLNLWSFLEIDVG LENSEKTKIRSFGDQEEEAISRIRKELMRNIPFLVIIDNLESEKDWWDQKLVMDLLPVFGGETHILISTRLPRVMNLEPMKLSYLSGVEAMVLMQGTMKD YSIPEIDALRAIEEKVGRLTLGLAIVGAILSELPINPSRLLDTVNRMPLREIPWSSGRETNPLRRNTFLLQLFEVCFSIFDHVDGPRSLANRMVQASGWF APAAVPVSLLALAASKIPEKDRGKKAWRQLLSSMSCGLASSYTKRSEAEASSLLLRFNIARSSTRPGYIHINELVKLYSRKKGTPEIARAMVRAVLNRGS IFHHSEHIWSACFLTFGFGNDPKAVELQVPELLYIAKEVILPLAIRTFITLSRCKAAVELLRLCTDALEEADQAFVTPVEKWLDKSLLCWRPIQTNAQLN PYLWQELALTRATVLETRAKLMLRGGQFDVGDDLIKKAIFIRASICGENHPDTVAARETLSKLSRLLAKVQTHSNSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	1.0	0.9329
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011678 [exp]	1.4	0.8467
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	3.2	0.8371
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	3.7	0.8324
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	4.5	0.8403
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	4.6	0.8429
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	4.9	0.8202
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	5.5	0.8333
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	7.2	0.8200
AT4G08310			unknown protein		Lus10028028 [exp]	8.0	0.8169

Compare expression of checked genes

Lus10032275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.