Plant FIBer expression Database

Lus10032276 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52430 197 / 3e-58 hydroxyproline-rich glycoprotein family protein (.1)
AT1G63720 156 / 3e-43 unknown protein
AT4G25620 157 / 7e-43 hydroxyproline-rich glycoprotein family protein (.1)
AT1G76660 113 / 2e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024642
[exp]
776 / 0 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1)
Lus10028779
[exp]
300 / 1e-94 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1)
Lus10017503
[exp]
298 / 4e-94 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1)
Lus10027498
[exp]
193 / 2e-54 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1)
Lus10039253
[exp]
189 / 7e-54 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1)
Lus10016050
[exp]
118 / 8e-29 AT1G76660 438 / 5e-152 unknown protein
Lus10025171
[exp]
119 / 1e-28 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G102200
[exp]
351 / 4e-117 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1)
Potri.003G129400
[exp]
306 / 1e-99 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
Potri.012G144200
[exp]
259 / 1e-80 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1)
Potri.002G001100
[exp]
132 / 1e-33 AT1G76660 487 / 1e-170 unknown protein
Potri.005G260000
[exp]
123 / 1e-30 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence
>Lus10032276 pacid=23168621 polypeptide=Lus10032276 locus=Lus10032276.g ID=Lus10032276.BGIv1.0 annot-version=v1.0
ATGCGACGAGGAAATAGTAGTCATAGCGGCGGAGGAATAGGAGCTGTAGGTTCCAGAGCTTCTGCTCCTCCGTTAAACAATAGTAACAGCGCCTTGGATA
CTATTAACGCCGCTGCTTATCGCATAGCCTCGCTCGAGGATCGTCCTACTCAGGCGACTTCCGCCGCCGCTTCCGCTCAGAAGAAGGGATGGGGAGGCTG
CTGGAACATACACTTGTGCTTTGGATATCAGAGGCGCAGGAAACAAATTGGACATGCTGTAATTCTCCCAGAACCACAACCTTCCGGAACTGGAAATGAA
GCATCAGCTACAGCAGAAAATCAAAACCAACCTACAACATTTGTATTCCCCTTTAATGCACCTCCTTCCTCACCTGCTTCATTCCTTCCATCAGAACCTC
CCTCAGTCACACAATCACCAGCTGCTTCAATCTCTCTGTCTGCCTCCATGTACTCTCCAACTGGACCTTCCTCCATCTTTGCCATTGGCCCTTACGCTCA
CGAAACCCAGTTGGTTTCACCGCCCGTGTTCTCAACCTTCAATACCGAGCCATCAACAGCTCCTTTCACACCTCCCCCAGAGTCTGTTCACCTCACTAAC
ACCACACCTTCCTCGCCCGAAGTGCCTTTTGCTCAGCTACTAGACCCCAGGGTCCGAAACGGTCAACATGATCTGACATTCCCGTCATCTCACTATGAGT
TTCAGTACTACCAGTTTCATCCTGGAAGCCCCGCAGGCCAGCTCATTTCACCTCGATCGGGGATATCGAGTTCAGGGACTTCATCCCCTTTCCAAGATGG
CCAGTTTGCCACTGTTGGGTTCCCCTTTATGGAGTTTCATATAGGTGAGCCTCCAAACCTCCTGAGCGCTGGTAAGCTTTCCCCACAGGATTTGGGCTCA
CGTCAAGGATCTGGAACTTTGACCCCAAACTCTGTAAGGTCTACATCGGAAAGCCACTTTGTCTTAAACCGTCAATTCTCCGATCTTGGCCATGTGGGTG
GCAGTGAACGTCAAAACTATCAGCTCTCCCATCACAGAGTCTCTTTTGATTGGCCAGCTGGTGATCCTTCGAGATATGAAGAGCCAAATGGAACAAAATC
ACCCGAAACATCCAACAATGCACCCGAAAAAGCTCGTGATACTAGGAAGGAGGATGGGGAGGAAGAAGGAGCAACCCATGGTAGACGACATCGAACCATA
ACGCTTGGCTCTGCCAAAGACTTCGACTTTGTAGACGACGAAGAAGATACCGGAGGAAAAGACACACAGAAGAAGCCTAATAACTGGTGGAGGAATAATG
GTGGGAGTGTCATTGGAAAACAAGGGGAAACTCTAGAGAATTGGTCATTCTTTCCTACTATCCAGCCCGGTAGAGTTAACTAG
AA sequence
>Lus10032276 pacid=23168621 polypeptide=Lus10032276 locus=Lus10032276.g ID=Lus10032276.BGIv1.0 annot-version=v1.0
MRRGNSSHSGGGIGAVGSRASAPPLNNSNSALDTINAAAYRIASLEDRPTQATSAAASAQKKGWGGCWNIHLCFGYQRRRKQIGHAVILPEPQPSGTGNE
ASATAENQNQPTTFVFPFNAPPSSPASFLPSEPPSVTQSPAASISLSASMYSPTGPSSIFAIGPYAHETQLVSPPVFSTFNTEPSTAPFTPPPESVHLTN
TTPSSPEVPFAQLLDPRVRNGQHDLTFPSSHYEFQYYQFHPGSPAGQLISPRSGISSSGTSSPFQDGQFATVGFPFMEFHIGEPPNLLSAGKLSPQDLGS
RQGSGTLTPNSVRSTSESHFVLNRQFSDLGHVGGSERQNYQLSHHRVSFDWPAGDPSRYEEPNGTKSPETSNNAPEKARDTRKEDGEEEGATHGRRHRTI
TLGSAKDFDFVDDEEDTGGKDTQKKPNNWWRNNGGSVIGKQGETLENWSFFPTIQPGRVN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52430 hydroxyproline-rich glycoprote... Lus10032276
[exp]
0 1
Lus10038520
[exp]
3.2 0.9491
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10019991
[exp]
6.0 0.9412
AT4G28400 Protein phosphatase 2C family ... Lus10008556
[exp]
9.4 0.9384
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Lus10014086
[exp]
10.2 0.9241
AT3G23610 DSPTP1 dual specificity protein phosp... Lus10036877
[exp]
11.0 0.9246
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10033743
[exp]
11.2 0.9406
AT3G25610 ATPase E1-E2 type family prote... Lus10019152
[exp]
12.1 0.8999
AT3G19615 unknown protein Lus10042265
[exp]
12.3 0.9283
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Lus10012212
[exp]
12.8 0.9348
AT3G05660 AtRLP33 receptor like protein 33 (.1) Lus10002214
[exp]
14.5 0.9294

Lus10032276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.