Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63710 791 / 0 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT4G00360 782 / 0 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT2G45970 779 / 0 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G01600 773 / 0 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT5G58860 647 / 0 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT5G23190 456 / 3e-155 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 448 / 8e-153 Cytochrome P450 superfamily protein (.1) AT1G24540 375 / 4e-124 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G69500 369 / 1e-121 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT1G13150 367 / 7e-121 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024644 [exp] 784 / 0 AT1G63710 562 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10014768 [exp] 704 / 0 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10018217 [exp] 661 / 0 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 660 / 0 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10017789 [exp] 424 / 2e-146 AT2G45970 465 / 1e-163 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Lus10017394 [exp] 431 / 4e-145 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 429 / 1e-144 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10018830 [exp] 415 / 4e-143 AT2G45970 465 / 8e-164 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Lus10040986 [exp] 402 / 6e-134 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129100 [exp] 858 / 0 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.014G085800 [exp] 812 / 0 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.009G043700 [exp] 662 / 0 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 650 / 0 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 435 / 7e-147 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 426 / 6e-143 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 385 / 8e-128 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 384 / 3e-127 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G088900 [exp] 361 / 3e-118 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.001G397900 [exp] 350 / 5e-114 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032278 pacid=23168568 polypeptide=Lus10032278 locus=Lus10032278.g ID=Lus10032278.BGIv1.0 annot-version=v1.0 ATGGAACCCACGACGGTTCTCATCATTCTCACCGCCGTCGCCGCCTACTTCCTGTGGTGGAGGTCAGTGTCGAGGACGCTGTCCGGTCCACGTGTCTGGC CGCTATTGGGAAGCCTCCCCGGCCTCATTGCCAACGCCGACACAATGCACGACTGGATCACCGACAACCTCCGCGCCGCCGGCGGGACATACCAGACTTG CATCGCCGGCGTCCCTTTCTTGGCCCGGAAGCAAGGTCTGGTGACGGTGACGTCCGATCCAAGGAACGTGGAGCACATCTTGAAAGCCCGGTTCGACAAT TACCCCAAGGGCCCCACCTGGCAGTCGGTATTCCACGATCTGCTCGGCGAGGGAATCTTCAACTCGGACGGTGACACGTGGCTGTTCCAGCGTAAGACCG CCGCGCTGGAATTCACCACCCGGACTCTCCGACAGGCCATGGGCAGGTGGGTGAACCGGGCGATTAAGAACCGGTTCTGCCCGATTCTCGAGTCGGCTCA GCTTCGGGGTGATCCGATTGACCTCCAGGACTTACTGCTTCGGCTCACTTTCGACAACATTTGCGGCTTGGCGTTTGGGGAGGATCCGGAGACTCTATCT CCTGAACTCCCCGAAAACGGCTTCGCAGTGTCTTTTGATTGTGCCACGGAAGCCACGCTTCAGCGATTCATCGTGCCCGAGCTCGTGTGGAAGCTGAGGA AACGGCTCGGGCTCGGAATGGAAGTTAGTATGACTCAAAGCCTTGATCATATTGATGGGTACTTGTCCAAAATCATCAATACACGTAAGCTCGAGCTGGC AGGCTTAGCAAAGAGCAGTAGCAACGGGGACCCACACGACGACTTGTTGTCCCGATTCATGAAGAAAAAAGAGTCCTACTCTGAAAAATTCCTTCAACAC GTGGCGCTGAATTTCATTCTAGCTGGACGAGACACATCTTCGACTGCATTGAGCTGGTTTTTCTTTCTAGTGAGTCAAAACCCACGAGTGGAGGAGAAAA TCTTGATGGAGATCTGCACCGTTCTGACAAAGACACGTGGCGAATTCCTCAACCAATCATCATCCGACTGGCTAAAGGAGCCACTCGGGTTCGAAGAGGT TGACCAATTGATATATCTCAAGGCTGCATTATCCGAGACACTAAGGTTGTACCCGTCGGTCCCACAAGACTCCAAACACGTGGTGGCCGCCGACATCCTG CCTTCGGGAGCCCGCGTTCCGGCAGGATCGTCGGTGACCTACTCGATCTACTCAATGGGTCGAATGAAATTCATATGGGGAGACGACTGCCAAGAATTCA GGCCGGAGAGGTGGCTGACACAAGACGGTACGAGATTCGACGTACGAGATTCGTACAGGTTCGTCGCGTTCAATGCGGGGCCTAGGATCTGTCTAGGGAA GGATCTGGCCTACTTACAAATGAAGTCGATCGCAGCGGCGGTGTTGCTCCGGCACCGGCTGACGGTGGTGCCGGGGCACCGCGTGGAGCAGAAGATGTCG CTGACATTGTTCATGAAGTATGGTTTGGTGATGGATGTTGGGCCGAGGGACCTTGGGCCGATTGTGGGGAAACTAAGCAGCCCAATTAACGGGAAGGCCC CCATTGAATTCGCCAAGGAAAGTAGTAGTGATCAATTGGCAGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNGTAGTGAGCAATGTCCGCCCGCCGTTGCTTGATATTTTATTATTTTTAGAAATTTAA
AA sequence Show only first row Show all	>Lus10032278 pacid=23168568 polypeptide=Lus10032278 locus=Lus10032278.g ID=Lus10032278.BGIv1.0 annot-version=v1.0 MEPTTVLIILTAVAAYFLWWRSVSRTLSGPRVWPLLGSLPGLIANADTMHDWITDNLRAAGGTYQTCIAGVPFLARKQGLVTVTSDPRNVEHILKARFDN YPKGPTWQSVFHDLLGEGIFNSDGDTWLFQRKTAALEFTTRTLRQAMGRWVNRAIKNRFCPILESAQLRGDPIDLQDLLLRLTFDNICGLAFGEDPETLS PELPENGFAVSFDCATEATLQRFIVPELVWKLRKRLGLGMEVSMTQSLDHIDGYLSKIINTRKLELAGLAKSSSNGDPHDDLLSRFMKKKESYSEKFLQH VALNFILAGRDTSSTALSWFFFLVSQNPRVEEKILMEICTVLTKTRGEFLNQSSSDWLKEPLGFEEVDQLIYLKAALSETLRLYPSVPQDSKHVVAADIL PSGARVPAGSSVTYSIYSMGRMKFIWGDDCQEFRPERWLTQDGTRFDVRDSYRFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVVPGHRVEQKMS LTLFMKYGLVMDVGPRDLGPIVGKLSSPINGKAPIEFAKESSSDQLAAAXXXXXXXXXXXXXXXXXXXVVSNVRPPLLDILLFLEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	1.4	0.9827
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	2.4	0.9827
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	3.0	0.9765
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	3.7	0.9650
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	6.0	0.9712
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	7.7	0.9738
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	7.9	0.9624
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	8.7	0.9300
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	8.7	0.9728
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	10.8	0.9199

Compare expression of checked genes

Lus10032278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.