Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 786 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 404 / 2e-130 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 360 / 3e-112 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 290 / 4e-87 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 284 / 3e-84 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 270 / 3e-79 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 260 / 4e-76 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 250 / 6e-73 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 240 / 2e-67 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 241 / 9e-66 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024645 [exp] 1512 / 0 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 792 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 757 / 0 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 702 / 0 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 664 / 0 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 422 / 4e-131 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 377 / 2e-120 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10019635 [exp] 355 / 1e-110 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 355 / 3e-110 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102900 [exp] 947 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 927 / 0 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 850 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 810 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 423 / 4e-137 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 414 / 7e-134 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G039800 [exp] 359 / 1e-112 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 358 / 1e-111 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 320 / 2e-96 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 316 / 1e-95 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032279 pacid=23168654 polypeptide=Lus10032279 locus=Lus10032279.g ID=Lus10032279.BGIv1.0 annot-version=v1.0 ATGCCTTGGTGGGGAAAGTCTTCATCAAAAGAAGAAAAGAAGAAAGCAAACAAGGAAAGTATCATTGATGCAATACAGAGGAAATTCAGAAATGCAACCG AGGATAAGGGAACTGGTAGGACTGCTTGGAGATGTTCTAGGGATGTTATCTCGCTTTCCCGGGTGCCATCAAGATCTCCATCGCCATCGGCACTAGTCTC CCGATGCCAAAGCTTCGCTGAAAGGTCTCATGCTCAACCACTTCCACTTCCTGGTATACGTGGTACCCCTATTGTCCGATCTCATTCTGGAGTTAGTGGT TCTGCAAAGTCAGGTTCGGATGCAGGATCCAAACATTTGCAAGTGTTGCCTCTTCCGAAGACTGGTGGTAATGTTTCTAATCGGTTGGACCGAGTAAAAC TCGAAGTGGATATTGGAACTGCTTCTGTCTCTAGCGATAGTTCAAGTGATAGTGAAGACCAGTCAGATTCACGTCTCCTTAGTCCCTTGACATCAGACTA CGAAAATGGAAACAGAACAGCTGCAAATAGCCCTTCAAGCATGACTCAGAAGGATTGTTCTCCTCTTCTTAGCCGGAAGAACTCGGGAGAGATATTGAAG CATTCCGACTTCTCACTAAGTAATCAGTTGCCAACTGTATCGCCTAGAAGGGCGCATCGTGTACAGAATCTACAGATTCCTACAAGAGGCACACTTTTTA GTGCTCCAGACAGCTCATTGTCAAGTCCTTCTAGGAGCCCCATCAGGGCATTCGGCACTGAGCAAGTTGTAAATACTGGTTTATTACTAGGTTCTGGCCA CTGTTCGAGTCCCGGTTCAGGTTATAATTCCGGACAGAACTCAATAGGTGGAGGAGAATTATCAGGGCAGCTTTTCTGGCCTAACAGTAGATGCAGCCCT GAGTGCTCTCCTATACCGAGTCCTAGAATGACAAGTCCTGGTCCCAGCTCCAGAGTCCAGAGCGGGGCTGTCACCCCTCAGCATCCACAAGCTCGTGGGG GTTTGACTGAGTCACCTAGAGGCAGCAGGCAAGAAGAGTGCAAGAAACAGAGCCATCGATTACCTGTTCCCCCAATAACAATCTCTAATACTTGTCCTTT CTCTCCTGGTTATTCTGCTGCAACCTCTCCTTCACTACCACGGAGTCCTAATAGGGCAGAAACCCCAACCAGCCCTGGTTCCCGCTGGAAAAAGGGCCGT CCTTTAGGGAGAGGCACATTTGGGGATGTGTTTCTTGGATTCAACAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAAGTAACTCTATTTTCGGATGATG CAAAATCAAGAGAAAGTGTACAGCAGCTTGGACAAGAAATCGCAATGCTGAGTCGCTTAAGGCATCCTAATATAGTGCAGTACTATGGGACTGAAACGGT GGAGGACAAGCTTTATATCTATTTGGAGTATGTTTCTGGTGGCTCCATTCATAAACTGCTTCAAGACTATGGTGCATTTGGTGAACTAGCCGTCCGTAAT TTCACTAAACAAATCTTGTCCGGCCTTGCCTATTTGCATGGTAAAAATACCGTTCACAGAGACATAAAGGGGGCTAACATTCTAGTCGATCCAAGCGGGC GGGTCAAAGTGGCAGATTTTGGGATGGCAAAGCATATTACTGGCCAATCATGTCCTTTATCATTCAAGGGAAGTCCTTACTGGATGGCACCTGAGGTGAT TAAGAATTCAAGTGGTTGTAATCTTGCTGTTGATATATGGAGCTTGGGGTGCACTGTTTTGGAGATGGCATCAGGAAAACCTCCATGGAGCCAGTACGAA GGGGTTGCTGCTATGTTTAAGATTGGAAACAGTAGGGAGCTTCCAGCAGTTCCTGATGATTTATCAGACGATGGAAAGGACTTCATAATGCAGTGTTTAC AACGAAACCCATCACGCCGTCCTACCTCTTCCCAGCTCTTAGAACACCCTTTCGTCAAGAATATCGCACCATCGGAGAGGGTAGTCATGGCTGCCGAGTC CTCTGAAATAACTGCAACCGGAAGATTAATGGGCATTGTACATGCAAGAAGCTCTGATACAGAAGCGATCTCCATTCATCAATCTGGAGCTCCGAGAACT AGTTCGGGATTCAGCGACTTCCATGCACCAAGGAACAACATATCATGTCCAGTATCCCCAATTGGAAGCCCTCTTCAATATACAAGGTCACCACAGCATA TGAGTGGAATGAGGTCTCCATCTCCCATATCTAGCCCCCATGCTGCCTCGGGTGCATCCACGCCACTTACTGGAGGGGGCTCGTGGCAACCGGCATCCTT CATCCACGAAACCTCAGGAATGGTTCCGAGGTCCCAAAACGGCTTCTACACTGGTAGCTCCAGTCCGTATCGGGAGCCGAATCCTGACATGTTTCGACAA GGGTTGTCTCAGACCTCCCACATTTTCCGGGATATGAGTTCAGCAAACAACAATGGTGGACTCGGGAACCAGTTTGGACAATTCGGACTGCAAGACTTCA GGGAAGTTCCTACTTCACAGCCCGTGTTGGCCGATCGTGTGTCTCAGCAGCTTCTAAGGGAGATTGATAGGTTAAAACCGTCCCTGGATCTGAATCCGAG CTCCAAAACTCACTGTTTCACTGTCCAGAGGGATTATATGCATCAAAGAAGTTCCTGA
AA sequence Show only first row Show all	>Lus10032279 pacid=23168654 polypeptide=Lus10032279 locus=Lus10032279.g ID=Lus10032279.BGIv1.0 annot-version=v1.0 MPWWGKSSSKEEKKKANKESIIDAIQRKFRNATEDKGTGRTAWRCSRDVISLSRVPSRSPSPSALVSRCQSFAERSHAQPLPLPGIRGTPIVRSHSGVSG SAKSGSDAGSKHLQVLPLPKTGGNVSNRLDRVKLEVDIGTASVSSDSSSDSEDQSDSRLLSPLTSDYENGNRTAANSPSSMTQKDCSPLLSRKNSGEILK HSDFSLSNQLPTVSPRRAHRVQNLQIPTRGTLFSAPDSSLSSPSRSPIRAFGTEQVVNTGLLLGSGHCSSPGSGYNSGQNSIGGGELSGQLFWPNSRCSP ECSPIPSPRMTSPGPSSRVQSGAVTPQHPQARGGLTESPRGSRQEECKKQSHRLPVPPITISNTCPFSPGYSAATSPSLPRSPNRAETPTSPGSRWKKGR PLGRGTFGDVFLGFNSESGEMCAMKEVTLFSDDAKSRESVQQLGQEIAMLSRLRHPNIVQYYGTETVEDKLYIYLEYVSGGSIHKLLQDYGAFGELAVRN FTKQILSGLAYLHGKNTVHRDIKGANILVDPSGRVKVADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSSGCNLAVDIWSLGCTVLEMASGKPPWSQYE GVAAMFKIGNSRELPAVPDDLSDDGKDFIMQCLQRNPSRRPTSSQLLEHPFVKNIAPSERVVMAAESSEITATGRLMGIVHARSSDTEAISIHQSGAPRT SSGFSDFHAPRNNISCPVSPIGSPLQYTRSPQHMSGMRSPSPISSPHAASGASTPLTGGGSWQPASFIHETSGMVPRSQNGFYTGSSSPYREPNPDMFRQ GLSQTSHIFRDMSSANNNGGLGNQFGQFGLQDFREVPTSQPVLADRVSQQLLREIDRLKPSLDLNPSSKTHCFTVQRDYMHQRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	1.4	0.7919
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	3.5	0.7899
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	3.5	0.7651
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	4.7	0.7222
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	7.3	0.7783
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	13.0	0.6933
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	16.3	0.7643
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	17.5	0.7329
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	17.7	0.7493
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	19.2	0.7229

Compare expression of checked genes

Lus10032279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.