Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11220 400 / 2e-137 ELO1 ELONGATA 1, Paxneb protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024652 [exp] 509 / 0 AT3G11220 353 / 2e-121 ELONGATA 1, Paxneb protein-related (.1.2) Lus10029517 [exp] 44 / 0.0003 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189500 [exp] 549 / 0 AT3G11220 453 / 2e-160 ELONGATA 1, Paxneb protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05625 [flax] [poplar] PAXNEB PAXNEB protein
Representative CDS sequence Show only first row Show all	>Lus10032284 pacid=23168675 polypeptide=Lus10032284 locus=Lus10032284.g ID=Lus10032284.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTAAGACTAGGACAAGTAGCTTTTCTCGCAACCTATCGGCGGCTGCTGCATCTTCTCCCCAAAGCCCTGAAATCAAGTGCGGCCCTAACG GAACATATTTTGTATCCTCTGGAATACCCGATCTCGACAGAACACTAGGTGGTGGTTTTCCTTTGGGAAGCTTGATCATGGTGATGGAAGATTCTGAAGC ACCTCATCACATGCTTCTACTCAGAAATTTCATGTCTCAGGGACTAGTCCACAAGCAGCCTCTTCTTTACGCTAGTCCATCCAATGACCCTAGAGCTTTT TTCGGCACTTTGCCTACTCCTTCCTCCTCGTCTGCGAAAGATGACAAAACCCGCAGCCATGATACAGAACAGGACAATGGTTTGAGAATAGCTTGGCAAT ACAAGAAGTACTTAGGTGAAAATCAGTCTAGTTTAAGTGGTAAAAAAGATAGTAAACAAGATTTCTGCAACGAGTTTGACTTGCGGAGGCCATTGGATAG ACATTTTTTCACAGGAAACCATGTAGAGTGTATTTCTACCAAAAGTTTACCAAATATTGCTGCTCTTCAGGAGCGCTGTTCTTCATTCTTGTCCCAGTTT CCCAGGAACGACGGGAACATTTCTTGCACCGGACGTATTGCCATTCAGTCATTGTGTGCTCCTCAATGTGAAACTTCCAATATGGAATGGGAGATGCTCT CATTTATCAGAGCTATGAAGAGCATTGTGCGGTCGACGAATTCAGTTGCGATGATTACTTTCCCTTCATCCCTATTATCACCTTCCTCCTGCAAAAGATG GCAACACCTTGCAGACTGTTTGGTGTCAGTTAAAGCAATCGAAGACGAAGATAAGGAGTTAGCCAAACTCCTGACGGGATACCAGGACATTGTTGGATTT CTCAACATACACAAAGTGCCACGCATCAACACTCAGGTTCCTGCAGTTTTGGAGGCGACAACATTGTCGATAAAGCTGCAAAAACGGAGGTTTCTGGTAT TGGAATGTTTGAATCAAGCCCCTATTGATGGTTCTGGCGGGAGCTCTTATGGCACATCCGGAAGTTGCTCTGCTGAGCTAAGTCGAAACTCGCATTATGT CAAAGTTCACACTTGGCACATTTTATCCCGAGTAGTTATTGGCTCATTCATGTGCAGCTCTATTAGCTTCTCTATGAATGGAAATCTACCCTCTAACATC GCTCCGAGTCGCCTGATCCATAATGTCTCTACACAAACTGCCTCGGTTCTGCACTGTTCACTCTTTGTCCGCAGATCAATAAGCTTCTTGCAATCTGATT CTATGATCAGAGGAGCCAACCGCAGAGCGTCAGCTTTCTGCAAACCAAACAGGACTGCTCGAGCTTCTGCGATGACAGGAGTCCACTCCACTGCTTCACT CTTTACTGCAGCAAACACAGCCTAG
AA sequence Show only first row Show all	>Lus10032284 pacid=23168675 polypeptide=Lus10032284 locus=Lus10032284.g ID=Lus10032284.BGIv1.0 annot-version=v1.0 MAATKTRTSSFSRNLSAAAASSPQSPEIKCGPNGTYFVSSGIPDLDRTLGGGFPLGSLIMVMEDSEAPHHMLLLRNFMSQGLVHKQPLLYASPSNDPRAF FGTLPTPSSSSAKDDKTRSHDTEQDNGLRIAWQYKKYLGENQSSLSGKKDSKQDFCNEFDLRRPLDRHFFTGNHVECISTKSLPNIAALQERCSSFLSQF PRNDGNISCTGRIAIQSLCAPQCETSNMEWEMLSFIRAMKSIVRSTNSVAMITFPSSLLSPSSCKRWQHLADCLVSVKAIEDEDKELAKLLTGYQDIVGF LNIHKVPRINTQVPAVLEATTLSIKLQKRRFLVLECLNQAPIDGSGGSSYGTSGSCSAELSRNSHYVKVHTWHILSRVVIGSFMCSSISFSMNGNLPSNI APSRLIHNVSTQTASVLHCSLFVRRSISFLQSDSMIRGANRRASAFCKPNRTARASAMTGVHSTASLFTAANTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	0	1
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	4.2	0.7984
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	5.3	0.8263
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	8.7	0.7507
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	9.2	0.7539
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	9.5	0.7834
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10043337 [exp]	13.7	0.7704
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	13.7	0.7489
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	14.7	0.8120
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	15.2	0.7644
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	16.6	0.7923

Compare expression of checked genes

Lus10032284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.