Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 712 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 657 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G43070 443 / 2e-147 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 406 / 3e-133 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT2G03120 92 / 8e-20 ATSPP signal peptide peptidase (.1) AT4G33410 89 / 1e-18 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G30290 44 / 0.0005 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14720 43 / 0.0008 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G14740 43 / 0.0008 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024653 [exp] 1019 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10031104 [exp] 753 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 708 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 538 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 541 / 3e-180 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10018834 [exp] 501 / 1e-170 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10001154 [exp] 436 / 8e-145 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 338 / 7e-109 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 181 / 4e-51 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128500 [exp] 766 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 745 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 694 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 681 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 465 / 6e-156 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 447 / 3e-149 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 94 / 2e-20 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 92 / 9e-20 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 91 / 1e-19 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.015G145600 [exp] 91 / 4e-19 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10032285 pacid=23168519 polypeptide=Lus10032285 locus=Lus10032285.g ID=Lus10032285.BGIv1.0 annot-version=v1.0 ATGGATCTGCATAAGCTGAGTTTGGTGGTCTGTTTTGCTGCTCTGATTTCGCTCTTATCTTCTCCGTATCCTGTCTTAGCAGGGGACGTAGTTCACGACG ATGATTCAGCTCCAAAGAGACCTGGCTGTGACAATGACTTCGCTCTGGTTAAAGTGCTTGCGTCGGTGAGCGGGCAAGAGGGTGCTGAATTTGGTGGTGT TGGGGCAAGATTTGGCGCCACTGTTGGATCAGATAAGAAGAATGCTAGGAAAACACATCTCACTCTTTCAGATCCCCAAAATTGTTGTACTACACCAAAG AACAAGCTTGCCGGAGACGTCGTATTGGTTAATCGTGGCAATTGCACGTTTACTGCAAAAGCTATTAACGCAGAGGCAGCTGGCGCTTCTGCCGTTCTTA TAGTAAATGATGAAAATGAGCTTTATGAGATGGTCTGTGACGCAGATGAAACAGATTTAGATATAGGCATACCTGTTGTTATGATACCTAAAGATGCGGG TGTGTTCTTGGAAAAACTGCTATCAAGCAATGCATCAGCAGTCGTCTCTGAATCCGGTGATGCAGAGGCAGACAACTTGAAGAACGACTCCATGGATCTG CATAAGCTGAGTTTGGTGGTCTGTTTTGCTGCTCTGATTTCGCTCTTATCTTCTCCGTATCCTGTCTTAGCAGGGGACGTAGTTCACGACGATGATTCAG CTCCAAAGAGACCTGGCTGTGACAATGACTTCGCTCTGGTTAAAGTGCTTGCGTCGGTGAGCGGGCAAGAGGGTGCTGAATTTGGTGGTGTTGGGGCAAG ATTTGGCGCCACTGTTGGATCAGATAAGAAGAATGCTAGGAAAACACATCTCACTCTTTCAGATCCCCAAAATTGTTGTACTACACCAAAGAACAAGCTT GCAGGAGATGTCATATTGGTTAATCGAGGCAATTGCACGTTTACTGCAAAAGCTATTAATGCAGAGGCAGCTGGCGCTTCTGCCGTTCTTATCGTAAATG ACGAAAATGAGCTTTATGAGATGGTCTGTGACGCAGATGAAACTGATTTAGATATAGGCATACCTGTTGTTATGATACCAAAGGATGCTGGCGTGTTCTT GGAAAATCTGCTATCAAGCAATGCATCAGTATTACTAATTGAAAACGTCTATTTCGAACACAACAGCCGTTTACACTCTTCTCCTCTCTTCACATTTGCA GTGTCCGTTCAGATGTACTCTCCAGATAGGCCACTGATCGAGTTATCTGAAGTGTTCCTGTGGTTGATGGCTGTTGGCACTGTTTTATGTGCATCCTATT GGTCTGCACGGAGTGCCAAAGAATCTGCCGTTGAAGAAGAAAAGCTGCTTAGGCGTGCTGTGGAAGAACCTCCTACTACAAGAGCTGATTCATACAGCAT CGTTGACATCAATACAACCTCTGCTGTGCTGTTTGTTGTCGTTGCTTCCTGCTTCTTGGTCTTGCTTTATAAATTTATGTCATACTGGTTCGTTGAGCTT CTGGTGGTTCTTTTCTGCATAGGCGGGGTTGAGGGTCTCCAAACTTGCTTGGTTGCTTTCTTCTCAAGGTGGTTCAAGCACGCCAGTGATTCATATGTTG AAATTCCCGTTTTGGGATACTTTTCATATCTGACTTTGGCGGTGTCTCCATTATGCATTGCCTTTGCTGTTGTTTGGGCTGTTTATCGCAATGCCTCTTT CGCCTGGATAGGTCAAGATGTGCTTGGAATCGCTCTAATTGTCACTGTTCTTCAAGTTGTCCAGATACCAAATCTCAAGGTGGGCACAGTTCTTCTCAGC TGTGCATTCCTCTACGACATATTCTGGGTGTTTTTGTCCGAGATGCTGTTCAATGTGAGCGTTATGATCGCGGTAGCTAGTGGTGGCGATAGCGGAGAGG ATGGCATTCCGATGCTCTTAAAAATGCCACGCTTCTTGGACCCATGGGGTGGTTACAGTGTTATAGGCTTTGGTGACATACTTCTGCCTGGATTGCTTGT AGCATTCTCACTCAGGTATGATTGGCTGGCACGCAAGGGTCTTCTAGCTGGATACTTTTTGTACACAATCATTGCTTATGGATTAGGTCTTCTGGTCACA TATGTTGCACTCTACTTCATGGATGGACATGGACAACCTGCATTGCTCTACATTGTCCCCTTCACACTTGGTAAAACAACTACAAGAAAAACAAACCTGA ACTGCGCAAAACAATTACCCTGCCATTCTTCACTAACAACTATGGCTTCTGGTGTGAATGCTACTCGTGCAGGAACGGTTTTGACGCTGGCGAAGGCAAG AGGAGAGCTTCGGATCCTGTGGACGCAAGGCCGGCCAGAAAGACTGAATCTTTGA
AA sequence Show only first row Show all	>Lus10032285 pacid=23168519 polypeptide=Lus10032285 locus=Lus10032285.g ID=Lus10032285.BGIv1.0 annot-version=v1.0 MDLHKLSLVVCFAALISLLSSPYPVLAGDVVHDDDSAPKRPGCDNDFALVKVLASVSGQEGAEFGGVGARFGATVGSDKKNARKTHLTLSDPQNCCTTPK NKLAGDVVLVNRGNCTFTAKAINAEAAGASAVLIVNDENELYEMVCDADETDLDIGIPVVMIPKDAGVFLEKLLSSNASAVVSESGDAEADNLKNDSMDL HKLSLVVCFAALISLLSSPYPVLAGDVVHDDDSAPKRPGCDNDFALVKVLASVSGQEGAEFGGVGARFGATVGSDKKNARKTHLTLSDPQNCCTTPKNKL AGDVILVNRGNCTFTAKAINAEAAGASAVLIVNDENELYEMVCDADETDLDIGIPVVMIPKDAGVFLENLLSSNASVLLIENVYFEHNSRLHSSPLFTFA VSVQMYSPDRPLIELSEVFLWLMAVGTVLCASYWSARSAKESAVEEEKLLRRAVEEPPTTRADSYSIVDINTTSAVLFVVVASCFLVLLYKFMSYWFVEL LVVLFCIGGVEGLQTCLVAFFSRWFKHASDSYVEIPVLGYFSYLTLAVSPLCIAFAVVWAVYRNASFAWIGQDVLGIALIVTVLQVVQIPNLKVGTVLLS CAFLYDIFWVFLSEMLFNVSVMIAVASGGDSGEDGIPMLLKMPRFLDPWGGYSVIGFGDILLPGLLVAFSLRYDWLARKGLLAGYFLYTIIAYGLGLLVT YVALYFMDGHGQPALLYIVPFTLGKTTTRKTNLNCAKQLPCHSSLTTMASGVNATRAGTVLTLAKARGELRILWTQGRPERLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	0	1
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	3.0	0.8166
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	6.2	0.8124
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	6.5	0.7447
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	6.9	0.8097
AT1G19140			unknown protein		Lus10039930 [exp]	7.7	0.7821
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	8.1	0.7935
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	11.0	0.8106
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	11.4	0.7341
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	12.4	0.7434
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	13.0	0.7595

Compare expression of checked genes

Lus10032285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.