Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41370 1147 / 0 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, homolog of xeroderma pigmentosum complementation group B 1 (.1) AT5G41360 1129 / 0 XPB2, ATXPB2 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 2, homolog of Xeroderma pigmentosum complementation group B 2 (.1) AT1G02080 174 / 5e-44 transcription regulators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024660 [exp] 306 / 3e-87 AT1G02080 2743 / 0.0 transcription regulators (.1.2) Lus10042877 [exp] 288 / 5e-83 AT1G02080 909 / 0.0 transcription regulators (.1.2) Lus10028176 [exp] 290 / 1e-81 AT1G02080 2621 / 0.0 transcription regulators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101300 [exp] 1169 / 0 AT5G41370 1266 / 0.0 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, homolog of xeroderma pigmentosum complementation group B 1 (.1) Potri.014G058800 [exp] 229 / 9e-62 AT1G02080 1830 / 0.0 transcription regulators (.1.2) Potri.002G143000 [exp] 219 / 2e-58 AT1G02080 1868 / 0.0 transcription regulators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF04851 [flax] [poplar] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Lus10032287 pacid=23168513 polypeptide=Lus10032287 locus=Lus10032287.g ID=Lus10032287.BGIv1.0 annot-version=v1.0 ATGGTTTCTTCAGGTGACAAGGGTCGACCGAAGAAGAAGTTCAAGTTTGTTGCCAAGGAGGATGCTGTAGATGGAGGTTATTACGGCGATGACGCTGGTG GGCAAAGGGAGGATGATTACGGTGAGAGGGAGGTGAAAAGGAGGGATTTTACCAAATTAGAGCTGAAGCAGGACCACGTCAATCGACCACTTTGGGCTTG TGGCGATGGCCGGATATTTCTGGAGACGTTCTCCCAATTGTACAAACAAGCATACGATTTTCTGATCGCAATTGCTGAGCCTGTTTGCAGGCCGGAGTCG ATGCACGAGTACAATTTGACTCCACATTCGTTGTATGCTGCGGTGTCGGTGGGTTTGGAGACTGAAACGATAATATCGGTTTTGAATAAGTTATCCAAGA CTAAACTTCCCAAGGAGATGATTGATTTCATTCATGATTCTACTGCTAATTATGGGAAAGTGAAGCTTGTCCTCAAAAAGAATAAATACTACATTGAATC CCCATTTCCAGAGGCAAGCTCACTCTGGTTTTTGTCGGGCGTGCTAAAGAAGTTGCTAAGAGATGAGGTCATTGGTCGAGCCAGGATTCAGTTTGAGAAT GAGCAAGGGCATGATGGATTCACAAAAAGTAAGACTGCTGGAGAAGTTGGAGGCAATCATGATGGGTTACTGAATGAAGCAGAATTAGCTGCAGCAGCTG AAGATAAAGAGACTCACTCTTTCCAAATCGACCCGGCTCAAGTGGAAAATGTAAAGCAACGGTGCTTGCCAAATGCTTTGAATTATCCGATGTTGGAGGA ATATGACTTCAGAAATGATCCTATGAATCCAGACATCAACATGGAATTGAAGCCCCATGCGCAACCGCGCCCATACCAGGAAAAGAGCCTTAGTAAAATG TTTGGAAATGGTAGAGCGAGGTCAGGCATCATTGTGTTGCCTTGTGGTGCTGGGAAGTCTCTAGTTGGAGTATCGGCAGCATCTCGGATAAGAAAAAGTT GCCTTTGTTTAGCAACAAATGCTGTCTCAGTGGATCAGTGGCATTTCCAGTTTAGGCTTTGGTCAACTATCCCAGATGAACAAATTACTCGTTTCACCTC TGACAGTAAGGAAAGGATCCAGGGTAATGCTGGTGTCGTTGTAACAACCTATAACATGATTGCTTTTGGAGGTAAAAGATCCGAGGAATCTGAAAAGATC ATTGAAGAAATAAGAAATAGGGAATGGGGACTTCTTCTGATGGACGAGGTGCATGTGGTTCCTGCTCACATGTTTCGTAAAGTTATCAGTTTGACTAAAT CTCACTGCAAACTTGGGCTTACTGCAACACTTGTGCGTGAGGATGATAGGATCACAGATTTGAACTTTCTTATTGGTCCTAAACTTTATGAAGCCAATTG GTTGGATCTTGTGAAAGGAGGATTTATTGCTAATGTACAATGTGCTGAAGTTTGGTGCCCGATGACCAAAGAATTTTTTGCAGAATATCTGAAGAAGGAA AATTCGAAGAGGAAGCAGGCACTTTACGTGATGAACCCTAACAAGTTCAGGGCATGCGAGTTCCTGATCAGGTTTCACGAAGAGCAGCGTGGTGACAAGA TAATTGTATTTGCTGATAACCTTTTTGCATTGCAAGCATATGCTGAAAAGCTTAAAAAACCTATGATCTATGGTGACACGAGCCACGCCGAGAGAACTAA AATTCTCCAGCTCTTCAAGACTAGCAAAGATGTAAACACAGTCATTTTATCAAAGGTTGGTGATAACTCTATCGATATTCCTGAGGCCAACGTGATCATT CAGATCTCATCTCATGCTGGTTCAAGGCGACAAGAAGCTCAGCGACTGGGTCGTATTCTTAGGGCAAAAGGGAAGCTCGAAGATAGGATGGCGGGAGGCA AAGAGGAGTACAACGCATTTTTCTACTCCTTAGTTTCTACTGATACACAAGAGATGTATTATTCCACGAAACGGCAGCAATTTCTAGTTGATCAAGGTTA TAGCTTCAAGGTTATAACAGAGTTGCCTCCAAAGGATTCGGGGACCGATTTGAGCTACCACAGCCGAGAGGAGCAATTGGATCTTCTACGGAAGGTTTTG TCGGAGAAAGTCGATAGGATCGGTTTAGAGCAGCTGGAAGAAGATGTAGATGATATAGCTCTCATGAAGGCGCGTCGGTTTGGAGGATCAATGAGCAAGA TGTCAGGCTCGGTTATCAAGCACCAACTGGTAACACATTTAACACTTGGGATTGCGTTACGTGGTGTCCTAGATGCACTACGCAAGCCTCCAGATTCAAA AATGTTTGTGTTTGGTACCAAGGCGCTGGAACAGTTTGTGGACCGTCTGATTGAATGGCCACAGTATTGCAATCATATCTTGCAAATATCTCATCTTTGT GGCGCTCATTCTGAGCTCTTTGCTTTCATTGAACGGCCGCTAGCCAGAATTTCATCTGGGCATTTGGAGACGGAAGGTGGGAATGCCTTTGCCAGTCACC AACATGCTTTGCCCCAAGCTGTATCAGGAAACGTTGAGTTCAGTGCTATTAACATAACAACTCCTGTGCAGCAACCGTCATCTATCACCAACATCCAACA GAGAGTTGAAGTACCCCTTGATGACCGCCATAAGCTGTCTTCTTCCATCAATGTAGGGTTTGGCTCAGCACTGAACATTGAAACACTTGTAGCAGCTGCA GAGAGACGAGAGACAACAAATTGA
AA sequence Show only first row Show all	>Lus10032287 pacid=23168513 polypeptide=Lus10032287 locus=Lus10032287.g ID=Lus10032287.BGIv1.0 annot-version=v1.0 MVSSGDKGRPKKKFKFVAKEDAVDGGYYGDDAGGQREDDYGEREVKRRDFTKLELKQDHVNRPLWACGDGRIFLETFSQLYKQAYDFLIAIAEPVCRPES MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHDSTANYGKVKLVLKKNKYYIESPFPEASSLWFLSGVLKKLLRDEVIGRARIQFEN EQGHDGFTKSKTAGEVGGNHDGLLNEAELAAAAEDKETHSFQIDPAQVENVKQRCLPNALNYPMLEEYDFRNDPMNPDINMELKPHAQPRPYQEKSLSKM FGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWHFQFRLWSTIPDEQITRFTSDSKERIQGNAGVVVTTYNMIAFGGKRSEESEKI IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDDRITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKE NSKRKQALYVMNPNKFRACEFLIRFHEEQRGDKIIVFADNLFALQAYAEKLKKPMIYGDTSHAERTKILQLFKTSKDVNTVILSKVGDNSIDIPEANVII QISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLVDQGYSFKVITELPPKDSGTDLSYHSREEQLDLLRKVL SEKVDRIGLEQLEEDVDDIALMKARRFGGSMSKMSGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLC GAHSELFAFIERPLARISSGHLETEGGNAFASHQHALPQAVSGNVEFSAINITTPVQQPSSITNIQQRVEVPLDDRHKLSSSINVGFGSALNIETLVAAA ERRETTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	0	1
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	3.0	0.8571
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	4.2	0.8457
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	5.3	0.8336
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	7.7	0.8119
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	10.2	0.7966
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	11.2	0.8111
AT4G10930			unknown protein		Lus10032402 [exp]	13.6	0.8084
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	14.1	0.8043
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	14.3	0.7281
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	15.6	0.8398

Compare expression of checked genes

Lus10032287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.