Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63820 161 / 3e-47 CCT motif family protein (.1) AT5G41380 152 / 1e-43 CCT motif family protein (.1) AT3G12890 92 / 1e-21 ASML2 activator of spomin::LUC2 (.1) AT2G33350 93 / 7e-21 CCT motif family protein (.1.2) AT1G04500 91 / 2e-20 CCT motif family protein (.1) AT5G59990 86 / 2e-19 CCT motif family protein (.1.2) AT4G27900 75 / 3e-15 CCT motif family protein (.1.2) AT5G53420 72 / 8e-15 CCT motif family protein (.1.2.3) AT2G24790 64 / 2e-11 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G15850 61 / 3e-10 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024655 [exp] 571 / 0 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10014478 [exp] 92 / 1e-21 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10023727 [exp] 93 / 2e-20 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10031192 [exp] 88 / 1e-19 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10031770 [exp] 87 / 2e-19 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10028137 [exp] 81 / 4e-17 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10014919 [exp] 75 / 4e-15 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3) Lus10005008 [exp] 75 / 6e-15 AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3) Lus10027344 [exp] 73 / 1e-14 AT5G53420 209 / 3e-67 CCT motif family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101200 [exp] 245 / 4e-79 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 242 / 4e-78 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.001G233600 [exp] 119 / 7e-32 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.010G066100 [exp] 107 / 5e-26 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.007G066800 [exp] 101 / 1e-24 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.008G171500 [exp] 102 / 2e-24 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.005G097700 [exp] 96 / 1e-22 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.012G014000 [exp] 85 / 8e-19 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 78 / 2e-16 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.001G136700 [exp] 75 / 3e-15 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10032288 pacid=23168695 polypeptide=Lus10032288 locus=Lus10032288.g ID=Lus10032288.BGIv1.0 annot-version=v1.0 ATGTCTTCTGATCTGTTCGTCCTCGACGTCGACTCCAACTTCTTCAACCGTTCTTCTAACAACAGCCCGGAAATGGCAATCTCCTCCTCCGAAGGGGGCG GGGACCTCTTCTTCTGCGACCAGCTCTGTTCTTCCTTTCCCGGCGACTCTTTCCTCGACATCTTCGAGGAATTCAAATCCGTCGCTAATAATGGCACTAC TGCTTCTTTCAGCCTGTCGAAGGCGGCGAGCAACCAGCTCCAGAGCTTGACAATCGGCTGCGACGACAGCGGCCGCCGTTTGGAGCCGGAAAACTGCTAC GGCGGACGCGGAATGGACATGGACGTGAAAACAGAGGAATGCCCTATGGGTTCGGAGAGTTTCGTCGCCAGTTACGGCTCGGCGGCGGTGGATAATAATA ATACTACTAACGGCGTCATCGACGGTGGCAACAACTTGAGGAAGTCGATGATGCAGAGAAGCTACAGCGGCGATTGTTTCGGCAGCGGCGGAGACGCAAG TTTCCTCTTCCAGCCGAGATTCCATTACCAGAACCGACTACTCAGCTCGCCCGAGAGTAACTTCCTCGCCGGCCAGCTGAGAAGAGTTTGTAGCACAGGC GATTTGCAAAATACTAGAAGAGCGAAAACGACGTCTCCGAGGTCACTTTCGAGCCCTTTAGCGATTGAGAAATCGCTTACGGAAGAATCCCAGATGAAAG TTGGGCGGTACAGTGCTGAAGAGAGACAAGAGAGGATCTCCAAGTACAGAGCCAAGCGTAGCCAGAGGAACTTCAACAAGACGATCAAGTATGCATGCCG GAAGACGCTAGCGGACAACCGGCCAAGGATACGCGGCAGATTCGCGCGTAACGACGAAATTATCTACTGTGAGAATATTCCCAAAGGAGGAGGAGCTGCT GCATGCTCCTCTAGAGACGATGACGAAGATGAACTATGGCAGTTTGATGAAGGAGACAAAGGAAGCTTTGGATCAGAAGCTCAGTTGCAGTTTCATGGAT ACTGA
AA sequence Show only first row Show all	>Lus10032288 pacid=23168695 polypeptide=Lus10032288 locus=Lus10032288.g ID=Lus10032288.BGIv1.0 annot-version=v1.0 MSSDLFVLDVDSNFFNRSSNNSPEMAISSSEGGGDLFFCDQLCSSFPGDSFLDIFEEFKSVANNGTTASFSLSKAASNQLQSLTIGCDDSGRRLEPENCY GGRGMDMDVKTEECPMGSESFVASYGSAAVDNNNTTNGVIDGGNNLRKSMMQRSYSGDCFGSGGDASFLFQPRFHYQNRLLSSPESNFLAGQLRRVCSTG DLQNTRRAKTTSPRSLSSPLAIEKSLTEESQMKVGRYSAEERQERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEIIYCENIPKGGGAA ACSSRDDDEDELWQFDEGDKGSFGSEAQLQFHGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63820			CCT motif family protein (.1)		Lus10032288 [exp]	0	1
					Lus10001069 [exp]	10.6	0.5751
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	15.2	0.5558
					Lus10032002 [exp]	19.0	0.5376
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	19.0	0.5187
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10037227 [exp]	22.8	0.5368
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10008180 [exp]	25.7	0.5198
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	36.7	0.5292
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	38.9	0.5292
					Lus10010383 [exp]	41.0	0.5292
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	41.1	0.5197

Compare expression of checked genes

Lus10032288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.