Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 393 / 2e-132 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 49 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 48 / 1e-05 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 45 / 0.0001 MAC3A MOS4-associated complex 3A (.1.2) AT5G23430 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 44 / 0.0001 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT3G21540 44 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 44 / 0.0003 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 44 / 0.0003 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 550 / 0 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 526 / 0 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024656 [exp] 404 / 3e-139 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 109 / 6e-28 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034648 [exp] 49 / 1e-05 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10041007 [exp] 48 / 1e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021720 [exp] 48 / 1e-05 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014477 [exp] 48 / 1e-05 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10013452 [exp] 48 / 2e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232500 [exp] 427 / 8e-146 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G029100 [exp] 407 / 4e-138 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G065200 [exp] 56 / 6e-08 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G171600 [exp] 51 / 9e-07 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 51 / 1e-06 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G255400 [exp] 49 / 5e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 44 / 0.0002 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.008G002300 [exp] 44 / 0.0002 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 44 / 0.0002 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.013G079600 [exp] 43 / 0.0005 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08149 [flax] [poplar] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Lus10032289 pacid=23168478 polypeptide=Lus10032289 locus=Lus10032289.g ID=Lus10032289.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATCTGCGCTGCTGCTCTGGTAATTCCGACAAGATGAAATCCGAACTGGAATTATCTGCAGAGTTCAATTTGAATCTGCCGAAGTACCTTA GAGGAGAAGCTCCTGACCTAGAGGCACTGAAAGATAAAAAGTTAAAAGGTCGGCAAATTGTTAGAGAAAAATTACATGAAAAGTCTGCAACTGTTGCTGC GAAGCATGAAAAGGGAAGCTTTATCGAGGCTGAAGCTATTGAGAAGACATGGAGGATTAAACAGAATGAGATTGCCCGTGAAGTAAATGGTAAAAGTTCA AGTAATCAGTACGATATAGTGTTGCCAGATCTTGGACCTTACTCTCTGGATTTCACTGCCAGTGGTCGATACATAGCCCTTGCTGGAGGCAAGGAGCATG TGGCTATTGTAGACCTGATAAGTATGGACAAAATTAGAGAGATGCAGGTTAAAGAAACAGTGTACCCTTATATTTATAACCGGGATGGAACTGAGCTTCA TTGGTTGAAGGAACATGGCCCGGTGTCGCATCTGCAGTTTCTTAAAAACCATTTCCTCTTAGCTTCATCAAGTACATTTGGACGTGCGGACGCGATGCAG GTCAGCCCTTTCAACGGCGTCCTAGCAGTAGGTCACTCTGGTGGCACAGTAACCATGTGGAAGCCCACGAGTGCTGCTCCCCTAGTCAAGATGCTCTGCC ATCCTGGTCCAATCTCTGCCCTAGCATTCCACCCGAATGGCCATCTCATGGCAACAGCTGGAAGGGAGAAGAAAATAAAGATTTGGGACTTGGCATCATG CCAAGACTTTGGATTTCAGCCAAAAGGGTTTACTAGCTGCAGGAACAGGGTCGTAGGCTCATGTTTTCGGAGGATTGTCAGGATCAGGAACTTACAGCCG GTACTTGGGTCATTCGATGGCGAAAGGATACCAGATAGGGAACGTTCTGGGGAGCCTAATTTTGATTCGTGGGTTGCGAATCCGTACGAGACGAGTAAAC AGAGAAGAGAGAAGGAGATCCATAATCTACTGGACAAGCTGCCACCGGAGACGATAATGTTGGATCCTTCGAAGATTGGTACATTGAGGACAAGCAGGAG GAAGGAAAAACCCACGAAGGAGATGGAAGAGGAGAAGGAGGCTGCGGTGGAGGCAGTGAAAGAGATTGCGTTGAAGAAGAAGACAAAAGGTAGGGCCAAG ACGAGCAAGAGAGTGATGAAGAGAAAGGTGATGGTTGATAAAGCTAAGAAACCTTTCTTGGAGAAGCAAAAGCAGGAGGAAGAAGGAAAAGTAAAAGTTG ATGATGGGAAGAAGAGGAAACCCGGCGAGGAACCTCACCTGCCTGCTTCTCTCCAGAGATTCGTGCGTAAGAAGGCTGCTTAG
AA sequence Show only first row Show all	>Lus10032289 pacid=23168478 polypeptide=Lus10032289 locus=Lus10032289.g ID=Lus10032289.BGIv1.0 annot-version=v1.0 MAEDLRCCSGNSDKMKSELELSAEFNLNLPKYLRGEAPDLEALKDKKLKGRQIVREKLHEKSATVAAKHEKGSFIEAEAIEKTWRIKQNEIAREVNGKSS SNQYDIVLPDLGPYSLDFTASGRYIALAGGKEHVAIVDLISMDKIREMQVKETVYPYIYNRDGTELHWLKEHGPVSHLQFLKNHFLLASSSTFGRADAMQ VSPFNGVLAVGHSGGTVTMWKPTSAAPLVKMLCHPGPISALAFHPNGHLMATAGREKKIKIWDLASCQDFGFQPKGFTSCRNRVVGSCFRRIVRIRNLQP VLGSFDGERIPDRERSGEPNFDSWVANPYETSKQRREKEIHNLLDKLPPETIMLDPSKIGTLRTSRRKEKPTKEMEEEKEAAVEAVKEIALKKKTKGRAK TSKRVMKRKVMVDKAKKPFLEKQKQEEEGKVKVDDGKKRKPGEEPHLPASLQRFVRKKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	0	1
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	2.4	0.8046
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	3.0	0.8409
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	4.9	0.8254
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	10.0	0.8045
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	12.6	0.8030
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	13.4	0.7951
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	16.2	0.7657
					Lus10011739 [exp]	16.7	0.7659
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	17.7	0.7699
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	20.9	0.7988

Compare expression of checked genes

Lus10032289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.