Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41410 266 / 1e-81 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT4G36870 243 / 1e-71 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 236 / 3e-70 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G34610 199 / 3e-57 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 197 / 7e-57 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G35940 197 / 3e-55 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G19700 189 / 2e-53 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 187 / 1e-52 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 152 / 1e-40 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT5G02030 147 / 4e-38 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028770 [exp] 362 / 2e-118 AT5G41410 344 / 2e-110 BELL 1, POX (plant homeobox) family protein (.1) Lus10017513 [exp] 322 / 2e-102 AT5G41410 340 / 1e-108 BELL 1, POX (plant homeobox) family protein (.1) Lus10016790 [exp] 215 / 1e-63 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 218 / 2e-62 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10029405 [exp] 205 / 4e-58 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 205 / 5e-58 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 193 / 9e-55 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 186 / 4e-51 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 184 / 1e-50 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131300 [exp] 391 / 4e-129 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 388 / 7e-128 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 239 / 5e-70 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 231 / 8e-67 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G159300 [exp] 207 / 7e-59 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.016G069700 [exp] 206 / 1e-58 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G120800 [exp] 203 / 1e-57 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.006G203000 [exp] 195 / 1e-54 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.002G031000 [exp] 191 / 5e-53 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.001G216600 [exp] 179 / 1e-48 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Lus10032292 pacid=23168579 polypeptide=Lus10032292 locus=Lus10032292.g ID=Lus10032292.BGIv1.0 annot-version=v1.0 ATGATAATGATGAACCAGCATGAGATCCAGCAGCAGCAGCAGATCTTCGGATCACCTCCTTCTTCTGATCAAATCTTCAACCTCACTTCTTGGAAACCCT TCTCCGCCGCCCCACCCCCGCCGGATTCTTCCACCCCCTCCGCCGCCGTTCACCACCACCAGTTCTACCACCAGGAATTCCACCCTGCGACGACGACTCA ACAAGGAGGACAACTCTCGCTCTCTCTCTCCTCCACCATCGATCCGTCGAGTAATTTCTTCCAGCAGCAGTTTCAGTTTCAGAGGCCGCCGTCGAGGTAC TTGGGTCCTGCTCAGGAGCTTCTGAACGAGTTCTGCAGCCTCAAACAAGTCGACACTACTAGTCCAACCACCAAACCCAATAACAACAACAACAAAAACG ACGTCGTCATCGTCGATAATAACCAGCAATCGTCTAGTATTGGGTCGGTTGAGTTCCTCGAGCTCCAGAAGCGCAAAACTAAGCTCATCTCCTTACTCTC CGAGGTGGATAGGAAGTACAGGCACTACTGCGACCAGATGAGAGCGGTGGTGTCGTCCTTCGAAGCGGTGGCCGGGGCTGGGGCGGCCACGGTGTACTCG GCCCTGGCTTCGAAGGCGATGTCGAGGCATTTTCGGTGCTTGAGAGACGGGATAGTGGTCCAAATCCAAACTACGAAGAAGGCAATGGGGGAGAAAGATC CGGTGGTTCCCGGCACGACTCGAGGCGAGACCCCGAGGCTTAAAGTTGTTGATCAAGCTGTGAGGCAGCAGAAGGCTTTCCAGCAGATGAACAGTAGCAT CATGGATAGCCAGCCTTGGCGCCCCCAGCGTGGCCTCCCCGAGAAATCGGTCTCGCTTCTCCGCGCTTGGCTCTTCGAACACTTCCTCCACCCGTATCCA AGTGATGTTGATAAACACATCTTAGCCAGACAAACCGGCCTCTCAAGAAGCCAGGCAAGTCTCATCTCTCTCCACCCTACTCTTTCGGGTTTCGGTCTGG TTTGGCTGGTGGAAATAGACAACGACGACGACGACGACGACATCCAAAATCTCATGATCATGTCTTCCTCCGATGTAGCAACAACCAGCCACGATCATCA TCATCTTCAGTACTCGTCGTCCGAGCAAAAGCCAACTCACGACCAGCTCGTTCGGATCGACTCTGATTGCCTCTCGTCCATCATCTCCTCCAACCCCGAC CACAAAGGCGACCACCAGTGGCGGATCCAGGATGATTCAAAGGGAGTATTACCGGCCTCCTCCCAACAAGGGTTCGGAACGTTTGGCGCGGTGGAGCTCG ATTTCTCGTCCTCTAACTACAACAACCACCAATCTGAGGCTGGGGTTTCGTATGATCATCTCCATCAGCAGATGCAAGTTGGTGGTGGGGTGTCATTGAC ACTAGGGTTGCAACAACATGGTGGATTGGGAAGCAATAGCATCTTCTTCCCAAGAGATCACCATCAGGAAGTGCAATACTCTTCAGTCCTTGATGGGTTG GATCAAGGTGGTGGTGGTGGTGGTGGAGTTCAGAATTTGCCTTACAGGAACCTGATGGGTGGCCATCAATTGCTTCATGACCTAGCTGGATGA
AA sequence Show only first row Show all	>Lus10032292 pacid=23168579 polypeptide=Lus10032292 locus=Lus10032292.g ID=Lus10032292.BGIv1.0 annot-version=v1.0 MIMMNQHEIQQQQQIFGSPPSSDQIFNLTSWKPFSAAPPPPDSSTPSAAVHHHQFYHQEFHPATTTQQGGQLSLSLSSTIDPSSNFFQQQFQFQRPPSRY LGPAQELLNEFCSLKQVDTTSPTTKPNNNNNKNDVVIVDNNQQSSSIGSVEFLELQKRKTKLISLLSEVDRKYRHYCDQMRAVVSSFEAVAGAGAATVYS ALASKAMSRHFRCLRDGIVVQIQTTKKAMGEKDPVVPGTTRGETPRLKVVDQAVRQQKAFQQMNSSIMDSQPWRPQRGLPEKSVSLLRAWLFEHFLHPYP SDVDKHILARQTGLSRSQASLISLHPTLSGFGLVWLVEIDNDDDDDDIQNLMIMSSSDVATTSHDHHHLQYSSSEQKPTHDQLVRIDSDCLSSIISSNPD HKGDHQWRIQDDSKGVLPASSQQGFGTFGAVELDFSSSNYNNHQSEAGVSYDHLHQQMQVGGGVSLTLGLQQHGGLGSNSIFFPRDHHQEVQYSSVLDGL DQGGGGGGGVQNLPYRNLMGGHQLLHDLAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	0	1
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	2.2	0.8669
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	3.0	0.8033
					Lus10037345 [exp]	5.3	0.8197
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	9.5	0.8363
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	9.9	0.8323
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	10.1	0.8212
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	10.2	0.8182
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	11.5	0.8291
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	11.8	0.8024
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	14.5	0.8011

Compare expression of checked genes

Lus10032292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.