Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23490 740 / 0 Protein of unknown function (DUF604) (.1) AT4G11350 739 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 729 / 0 Protein of unknown function (DUF604) (.1) AT1G01570 571 / 0 Protein of unknown function (DUF604) (.1) AT1G07850 538 / 0 Protein of unknown function (DUF604) (.1) AT4G00300 508 / 3e-173 fringe-related protein (.1.2) AT2G37730 413 / 2e-139 Protein of unknown function (DUF604) (.1) AT1G33250 369 / 6e-122 Protein of unknown function (DUF604) (.1) AT4G15240 343 / 5e-113 Protein of unknown function (DUF604) (.1) AT1G05280 339 / 1e-111 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017514 [exp] 847 / 0 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 591 / 0 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 550 / 0 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10024662 [exp] 530 / 0 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10024663 [exp] 516 / 0 AT5G41460 280 / 2e-94 Protein of unknown function (DUF604) (.1) Lus10028769 [exp] 410 / 4e-143 AT4G23490 370 / 1e-127 Protein of unknown function (DUF604) (.1) Lus10007923 [exp] 392 / 1e-132 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 371 / 1e-123 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 370 / 1e-122 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100700 [exp] 806 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 805 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 615 / 0 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 559 / 0 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 383 / 5e-128 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 382 / 8e-128 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 380 / 2e-126 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 373 / 8e-124 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 370 / 9e-124 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 357 / 6e-118 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10032293 pacid=23168674 polypeptide=Lus10032293 locus=Lus10032293.g ID=Lus10032293.BGIv1.0 annot-version=v1.0 ATGAAAGGGAACCAGAAAGATCCGGAGAAGATCATCTGGGATCGGAACCCGACTTCCATCCCCCAAACCCGGATCCTCCCCAAGCTCATGGTTTGGCTCT TGCTCTTCGTCACCGCCTCCTATGTCTTCTACACTCTCAAGCTCCTCTCCACTTCCCAATCTTGTAACGACGCTGCTCACCCTTTCTCCACCACCGCCGC GCGTCTCGACGACGCGCCTCCGGGTGATAAGAACACGCTCCTCTCTCTCGCTGCACTCTCTACCAAAGAATCCGACATCGTTTCCCTGCCGCGCCGGGAG ATCGAGGAGGAGAACAAGCCGGAGCCGACGGATTTGAAACACGTGGTGTTTGGAATCGCGGCGTCGGCGAAGCTCTGGAAGCAGAGGAAGAACTACATCA AGATCTGGTACAAGCCCGACAAGATGAGGGGCGTTGTCTGGATGGACGACAAGGTGTCCACGACTGCGGACCGTGACCTTCCGCCGGTGAGAATCTCCGG CGATACGTCGAAGTTCGTGTACAAGAACAGGCAAGGGCACAGGTCGGCCATCCGGATCTCGAGGATCGTCTCCGAGACGCTCCGCCTCGGGACGATGAAC GATGCGCGGTGGTTCGTGATGGGGGATGACGACACCGTTTTCGTCACCGAGAATTTGGTCCGGATTCTCCGGAAGTACGACCACACCCAGTATTACTACA TCGGGAGCCTCTCCGAGTCGCACCTGCAGAACATTTACTTCTCATACGGCATGGCCTACGGCGGCGGCGGGTTCGCCATCAGCTACCCGCTCGCGAAGGC GCTGGACAAGATGCAGGACCGGTGTATTCAGCGGTACCCGGGTTTGTACGGCTCCGACGACAGAATGCAGGCTTGTATGGCTGAGCTCGGCGTTCCTCTC ACCAAAGAAGTCGGGTTCCACCAGTATGATGTCTACGGGAATCTATTCGGTCTCCTGGCGTCACATCCAGTGGCGCCACTGGTCTCGCTGCACCACCTGG ACGTGGTGGAGCCGATCTTCCCCAACGTGACACGAGTTGAGGCACTCCAGAGGCTAACAGTGCCGATGAAGCTGGACTCGGCGGGGATAATGCAGCAGTC GATATGCTACGACAAGTCCAGGAGCTGGACCGTTTCCGTCTCGTGGGGGTTCGCCGTCCAGATATTCCGGGGAGTGCTCTCCCCCCGCGAGGTGGAAATG CCCTCGAGAACGTTCTTAAACTGGTACAGGAGGGCTGACTACACCGCCTACGCTTTCAACACTCGTCCAGTGAGCAGGAACCCTTGCCAGAAGCCCTTTG TGTTCTACCTCTCGAAGGCGAGATTTTTCGGGTCGTTGAAGACGACAGTGAGCGAGTACCAGAGGCATCGCGCCGTCCAGCCTCAATGCCGGTGGAAGAT GGCCGATCCTTCGGGTATCAACATGGCGGTCGTGTACAAGAAGCCCAACCCGACTCTCTGGAACAGGGCTCCAAGAAGGAACTGTTGCAGAGTGATGAAT ACAAAGAAGAAAGGATCAATAACCATTGATGTTGGAATGTGTAGAGATGGTGAAGTAAGTGAAGTATAG
AA sequence Show only first row Show all	>Lus10032293 pacid=23168674 polypeptide=Lus10032293 locus=Lus10032293.g ID=Lus10032293.BGIv1.0 annot-version=v1.0 MKGNQKDPEKIIWDRNPTSIPQTRILPKLMVWLLLFVTASYVFYTLKLLSTSQSCNDAAHPFSTTAARLDDAPPGDKNTLLSLAALSTKESDIVSLPRRE IEEENKPEPTDLKHVVFGIAASAKLWKQRKNYIKIWYKPDKMRGVVWMDDKVSTTADRDLPPVRISGDTSKFVYKNRQGHRSAIRISRIVSETLRLGTMN DARWFVMGDDDTVFVTENLVRILRKYDHTQYYYIGSLSESHLQNIYFSYGMAYGGGGFAISYPLAKALDKMQDRCIQRYPGLYGSDDRMQACMAELGVPL TKEVGFHQYDVYGNLFGLLASHPVAPLVSLHHLDVVEPIFPNVTRVEALQRLTVPMKLDSAGIMQQSICYDKSRSWTVSVSWGFAVQIFRGVLSPREVEM PSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYLSKARFFGSLKTTVSEYQRHRAVQPQCRWKMADPSGINMAVVYKKPNPTLWNRAPRRNCCRVMN TKKKGSITIDVGMCRDGEVSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	0	1
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	1.4	0.9445
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	2.4	0.9307
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	3.9	0.9186
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	4.2	0.8993
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	6.3	0.9124
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10032283 [exp]	6.5	0.8985
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	10.5	0.8907
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	11.6	0.8813
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	12.0	0.8635
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	17.9	0.8920

Compare expression of checked genes

Lus10032293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.