Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41470 177 / 3e-54 Nuclear transport factor 2 (NTF2) family protein (.1) AT1G71480 98 / 1e-24 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024664 [exp] 462 / 2e-166 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10041048 [exp] 97 / 6e-24 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10003793 [exp] 46 / 4e-06 AT4G22370 86 / 4e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131500 [exp] 226 / 1e-73 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.001G100500 [exp] 226 / 1e-73 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.019G074800 [exp] 98 / 1e-24 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 85 / 6e-20 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.002G070800 [exp] 75 / 9e-16 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 63 / 2e-11 AT4G22370 114 / 6e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032294 pacid=23168492 polypeptide=Lus10032294 locus=Lus10032294.g ID=Lus10032294.BGIv1.0 annot-version=v1.0 ATGGCTACCATTGCTAATTTCTCAACTCTCCCCTATAATAAGCCTACCTTCAAAGTGAGATACAGCAGCAGTAGAAGGCCATGCACCGGCAGCATCACTA ATTGTCTTCTGAGGAGGCAAGCAGAGAGTTACAACGGAATCCTTAGGCAGCAAAGATTGACGTTGTCCACAAAGAAAACGACAACCAAGTGCTTGCCGGT TGATGGCGTGGACAACACATCAGCAGGGTCCGATCCAATCATCTCTCCGACAACGGTGGTTGCCAATTTGTACGAGTTTATCAATGCCAAGAAGTTGAAG GAAGTTGGAGATCTCTTCTCTGAGGATTCTCGGTTGGAGGATTGCTGCTTCCCTTTCCCTATTCAAGGGAAAAAGGAAGCAAATATGTTCTTTCAACAGC TAACGAGTAGTATGGGTAAGAATGTGAAGTTCGTAATAGACCGAGTCTGCGAGAATCGTCATGAGCTCACAGTTGCAGTCAACTGGCACCTGGAGTGGAA CAACATTTTGATACCATTTTCTAGAGGCTGCAGCTTCTACGAATGCACATGGGAACTTGAAGGTGGCCTAATTATAAAGAAAGCTGTTGTTGTAATTGAG TCACCTATTAAACCAGGAGGCATTGTTATGGCACTGTTAAAGAATGTGACTGCCATATTCGACGAGTTTCCGAAAGCAGCTGAATGGTTTTTGCAGAGTC CTCATGTAATCGTCCGCTTCTTGATGAAGACATACACTACTTTTATGGCACCAGTTATCAAACCACTTGTAGTTGGCTACTTCAACATGGGACTCTGA
AA sequence Show only first row Show all	>Lus10032294 pacid=23168492 polypeptide=Lus10032294 locus=Lus10032294.g ID=Lus10032294.BGIv1.0 annot-version=v1.0 MATIANFSTLPYNKPTFKVRYSSSRRPCTGSITNCLLRRQAESYNGILRQQRLTLSTKKTTTKCLPVDGVDNTSAGSDPIISPTTVVANLYEFINAKKLK EVGDLFSEDSRLEDCCFPFPIQGKKEANMFFQQLTSSMGKNVKFVIDRVCENRHELTVAVNWHLEWNNILIPFSRGCSFYECTWELEGGLIIKKAVVVIE SPIKPGGIVMALLKNVTAIFDEFPKAAEWFLQSPHVIVRFLMKTYTTFMAPVIKPLVVGYFNMGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	0	1
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	1.7	0.9670
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	3.7	0.9588
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	4.6	0.9555
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	6.0	0.9501
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	6.7	0.9487
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	7.3	0.9436
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	7.5	0.9438
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	8.2	0.9302
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	9.2	0.9365
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	9.2	0.9445

Compare expression of checked genes

Lus10032294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.