Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 568 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 541 / 0 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 539 / 0 ATMPK5 MAP kinase 5 (.1) AT2G46070 525 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G07880 506 / 2e-179 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 482 / 4e-169 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 465 / 9e-163 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 442 / 1e-153 ATMPK10 MAP kinase 10 (.1) AT2G18170 392 / 2e-134 ATMPK7 MAP kinase 7 (.1) AT4G36450 387 / 2e-132 ATMPK14 mitogen-activated protein kinase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024668 [exp] 630 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 584 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 582 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 577 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 565 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 502 / 1e-176 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 501 / 2e-176 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 459 / 2e-160 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 457 / 2e-159 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131800 [exp] 601 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 580 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 575 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 571 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 507 / 5e-179 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 494 / 1e-173 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 470 / 8e-165 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 457 / 5e-160 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 400 / 5e-137 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 392 / 7e-134 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032295 pacid=23168635 polypeptide=Lus10032295 locus=Lus10032295.g ID=Lus10032295.BGIv1.0 annot-version=v1.0 ATGGTGTCAAGTGGAAGCAAAGAGTCGTCGAGCTCCGCTCCTGCAACGGCGGCCACCAAGACAGGAGGAGGAGGCGACAGAATAAAGGGTGTGTTGACTC ACGGCGGCCGTTATGTTCAGTACAATGTTCATGGCAACTTGTTCGAAGTTTCCTCCAAGTACGTCCCTCCTATTCGACCCATCGGCCGCGGCGCTTATGG CATCGTCTGTGCTGCGGTGAATTCGGACACACGGGAGGAAGTCGCGATAAAAAAGATTGGAAATGCATTCGATAACAGGGTCGATGCGAAGAGGACGTTG CGAGAGATCAAGCTGCTACGCCACATGGACCATGGAAATGTAATTGCTATCAGGGACATTATCCGACCACCGAAGAAAGAGGCATTCAATGATGTTTACA TAGTCTATGAATTGATGGATACTGATATGCATCAGATCATCCGTTCTGACCAGTTTTTGACTGATGACCACTGTCAGTACTTCTTGTATCAACTGCTACG AGGATTGAAGTACGTGCATTCAGCGAACGTCCTTCACCGAGATCTTAAGCCAAGCAATCTGCTTCTGAATGCAAACTGCGACCTTAAAATTGGGGACTTT GGTCTGGCGAGAACAACTTCTGAGACGGATTTCATGACAGAGTACGTTGTCACTCGTTGGTACCGAGCACCAGAACTGCTCTTAAATTGTTCAGAGTACA CTGCTGCCATAGATATTTGGTCTGTTGGTTGCATCCTTGGTGAAGTTATGACCAGTGAACCCTTGTTTCCTGGAAAGGATTATGTCCATCAACTCAGGCT CATTACAGAGTTGATAGGTTCACCAGATGATGATAGCCTCGGTTTCCTAAGAAGCGACAGCGCAAGAAGATACGTTAGGCAGCTACCACAGTTCAGAAAA CAGAACTTCTCCACAAGGTTCCCTACTATGTCGCCTGGAGCAGTCGATCTGCTCGAGAAGATGCTCGTATTCGATCCCAACAAGCGAATTACAGGTGAAG CTAACAAAACAGTAGATAAACTCACAGAATTGCAGAATGCTCGAGTGAAGTGTGCTTCAAAGAGGTTAAGGCTGGAGGACACCGGAGTTGAGCACTTCCT CCACCTGGACATGGCAAAAGAGTTGGATGTAGACAAGTTGAAGAAAGCATCCACAGAATATGCGGAGGTAAAGAAACATGCAATCAAAGAGGCCAGCAAG GGAGTTAATGTTCAAGATGTTGAGCATCTTGCAAATGATGAGGAACTGATTGGTGACGAAGTGGAGAAAATCACAGAGTGTTGGAAAGTCCAGAAGGATC TGTACTACAAAACAACAGGATTGGAATCCCCTCGGGGACAGCCTCACCAACTAGATGACGATGACGACGACAATGAAGATAACAACAATGACAATGAAGG TCGTGAGCTGGAAAGGGAACTACAGTTGTCCGACGAAAGATTTTGA
AA sequence Show only first row Show all	>Lus10032295 pacid=23168635 polypeptide=Lus10032295 locus=Lus10032295.g ID=Lus10032295.BGIv1.0 annot-version=v1.0 MVSSGSKESSSSAPATAATKTGGGGDRIKGVLTHGGRYVQYNVHGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNSDTREEVAIKKIGNAFDNRVDAKRTL REIKLLRHMDHGNVIAIRDIIRPPKKEAFNDVYIVYELMDTDMHQIIRSDQFLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDF GLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEVMTSEPLFPGKDYVHQLRLITELIGSPDDDSLGFLRSDSARRYVRQLPQFRK QNFSTRFPTMSPGAVDLLEKMLVFDPNKRITGEANKTVDKLTELQNARVKCASKRLRLEDTGVEHFLHLDMAKELDVDKLKKASTEYAEVKKHAIKEASK GVNVQDVEHLANDEELIGDEVEKITECWKVQKDLYYKTTGLESPRGQPHQLDDDDDDNEDNNNDNEGRELERELQLSDERF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	0	1
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	4.9	0.8622
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	4.9	0.8689
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	5.3	0.8638
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	5.9	0.9113
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	6.5	0.8977
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	9.5	0.8608
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	11.4	0.8175
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	13.8	0.8496
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	15.9	0.8972
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	18.2	0.8583

Compare expression of checked genes

Lus10032295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.