Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50950 850 / 0 FUM2 FUMARASE 2 (.1.2.3) AT2G47510 846 / 0 FUM1 fumarase 1 (.1.2) AT1G36280 44 / 0.0002 L-Aspartase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028532 [exp] 882 / 0 AT2G47510 881 / 0.0 fumarase 1 (.1.2) Lus10009114 [exp] 882 / 0 AT2G47510 882 / 0.0 fumarase 1 (.1.2) Lus10002606 [exp] 50 / 3e-06 AT5G10920 769 / 0.0 L-Aspartase-like family protein (.1) Lus10032846 [exp] 50 / 5e-06 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201300 [exp] 875 / 0 AT2G47510 877 / 0.0 fumarase 1 (.1.2) Potri.002G106200 [exp] 46 / 5e-05 AT5G10920 787 / 0.0 L-Aspartase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10415 [flax] [poplar] FumaraseC_C Fumarase C C-terminus PF00206 [flax] [poplar] Lyase_1 Lyase
Representative CDS sequence Show only first row Show all	>Lus10032296 pacid=23168592 polypeptide=Lus10032296 locus=Lus10032296.g ID=Lus10032296.BGIv1.0 annot-version=v1.0 ATGCAGATTAGGATAAAAGTACATGATCGTGGCGACGGTGCCGGAAGTCGCTCCATTAGAGCTAATAGAAGTTGTTATCGTGTATTAGCTCATGGTTGGC GATACACATTTTCAGTTCCATCTAATCTCTATAGCCATGAACTCACCCCCCGTTCTTTACAAACGTTGTTGCAGCCTTCAAATGCCTTCAGAGAAGAGAA AGACACGTTTGGGCCGATTCAAGTTCCTGCTGATAAGCTGTGGGGCGCGCAAACTCAAAGATCGTTGCAGAATTTTGAAATTGGCGGTGAGCGAGAGCGG ATGCCGGAGCCAATTATTCGGGCCTTCGGCATCCTCAAGAAATGTGCGGCAAAGGTGAACATGGAGTATGGGCTTGATCCAGCAATTGGTAAAGCCATCA TGCAGGCTGCTCAAGAGGTGGCTGATGGAATGCTGAATGAACATTTCCCACTCGTTATTTGGCAGACTGGTAGTGGCACTCAAAGCAACATGAATGCCAA TGAGGTTATTGCCAATAGAGCTGCTGAAATCCTTGGCCACAAGCGTGGCGATAAGTATGTGCACCCGAATGACCATGTGAATAGATCACAATCTTCCAAT GACACTTTTCCAACTGTGATGCATATAGCAGCTGCAATGGAAATAAACTCAAGACTATTACCAAATTTGAAGACTTTGTACGCTACTGTACATACAAAGT CTATTGAATTCAAGGATATTGTTAAGATTGGGCGTACTCATACTCAAGATGCAACTCCATTGACGCTTGGTCAAGAGTTTAGTGGCTATAGCACTCAATT GCAATATGGAATTGATCGTGTCACTTACACTCTACCCCGCATGTATCAGCTTGCTCAAGGTGGAACCGCAGTTGGAACTGGCTTGAACACCAAGAAAGGG TTTGATGTAAAGATTGCTCAAGCAGTAGCTGAAGAAACAAGGCTACCGTTTGTTACAGCAGAGAACAAGTTTGAAGCTCTGGCTGCACATGATGCTTTTG TTGAATGTAGTGGAGCTCTCAACACAATTGCTACTTCTTTGATGAAGATTGCCAATGACATACGCTTCCTTGGAAGTGGTCCAAGATGTGGCCTTGGCGA ACTTATTCTTCCAGAAAATGAGCCCGGCAGCAGTATCATGCCGGGCAAGGTTAATCCCACTCAATGTGAGGCACTCACTATGGTCTGTGCTCAGGTTATG GGAAACCACGTGGCCATAACTGTAGGTGGATCAAATGGCCACTTTGAATTGAATGTATTCAAGCCTCTGATTGCAAGTGACCTCCTTCATTCGGTGAGAT TGCTCGGAGATGCATCTGCTTCTTTTGAAAAGAACTGCGTGAAGGGAATTCAAGCTAACAAGGAAAGAATTTCCAAGTTGCTCCATGAGGCAAGTAATTC AGAATTAATCTCAGAAAGTAACACATTTTCACTAATGCTCGTTACATCCCTGAATCCTAAAATTGGGTACGACAATGCTGCTGCACTTGCTAAGCTTGCT CATAAGGAAGGACTGACTCTGAAGGAAGCTGCACTGAAATTGGCAGTTCTGACCAGCGATGAGTTTGATCAGCTGGTTGTACCTGAGAAGATGATTGGAC CATCTGACTGA
AA sequence Show only first row Show all	>Lus10032296 pacid=23168592 polypeptide=Lus10032296 locus=Lus10032296.g ID=Lus10032296.BGIv1.0 annot-version=v1.0 MQIRIKVHDRGDGAGSRSIRANRSCYRVLAHGWRYTFSVPSNLYSHELTPRSLQTLLQPSNAFREEKDTFGPIQVPADKLWGAQTQRSLQNFEIGGERER MPEPIIRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVADGMLNEHFPLVIWQTGSGTQSNMNANEVIANRAAEILGHKRGDKYVHPNDHVNRSQSSN DTFPTVMHIAAAMEINSRLLPNLKTLYATVHTKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYSTQLQYGIDRVTYTLPRMYQLAQGGTAVGTGLNTKKG FDVKIAQAVAEETRLPFVTAENKFEALAAHDAFVECSGALNTIATSLMKIANDIRFLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVM GNHVAITVGGSNGHFELNVFKPLIASDLLHSVRLLGDASASFEKNCVKGIQANKERISKLLHEASNSELISESNTFSLMLVTSLNPKIGYDNAAALAKLA HKEGLTLKEAALKLAVLTSDEFDQLVVPEKMIGPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	0	1
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	1.4	0.9201
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	3.3	0.9228
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	5.7	0.8840
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	7.3	0.8763
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	7.7	0.9019
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	7.9	0.9042
AT1G53200			unknown protein		Lus10030239 [exp]	8.3	0.8793
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	8.7	0.8813
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	9.9	0.9022
AT5G54850			unknown protein		Lus10011150 [exp]	11.0	0.9114

Compare expression of checked genes

Lus10032296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.