Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23496 79 / 1e-20 SP1L5 SPIRAL1-like5 (.1) AT1G69230 71 / 3e-17 SP1L2 SPIRAL1-like2 (.1.2) AT2G03680 68 / 4e-16 SKU6, SPR1 spiral1 (.1.2) AT1G26355 66 / 4e-15 SP1L1 SPIRAL1-like1 (.1) AT3G02180 64 / 3e-14 SP1L3 SPIRAL1-like3 (.1.2.3) AT5G15600 64 / 3e-14 SP1L4 SPIRAL1-like4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024667 [exp] 115 / 4e-35 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1) Lus10034675 [exp] 71 / 4e-17 AT1G26355 127 / 5e-39 SPIRAL1-like1 (.1) Lus10032988 [exp] 70 / 1e-16 AT1G69230 99 / 8e-28 SPIRAL1-like2 (.1.2) Lus10036916 [exp] 69 / 2e-16 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10000046 [exp] 69 / 2e-16 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10037069 [exp] 69 / 3e-16 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10026672 [exp] 66 / 4e-15 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1) Lus10026670 [exp] 66 / 5e-15 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1) Lus10004642 [exp] 64 / 2e-14 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100100 [exp] 93 / 7e-26 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1) Potri.003G131600 [exp] 89 / 3e-24 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1) Potri.010G157600 [exp] 69 / 2e-16 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1) Potri.008G097000 [exp] 69 / 2e-16 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1) Potri.017G095200 [exp] 68 / 5e-16 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2) Potri.015G059100 [exp] 63 / 5e-14 AT1G26355 98 / 1e-27 SPIRAL1-like1 (.1) Potri.T124504 [exp] 47 / 4e-07 AT1G19270 182 / 3e-53 DA1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032297 pacid=23168565 polypeptide=Lus10032297 locus=Lus10032297.g ID=Lus10032297.BGIv1.0 annot-version=v1.0 ATGAGCAGAGGAGGTAGCTACGGCGGCGGCCAGAGTTCCTTAGGCTACCTTTTCGGGTCCGGCGAACCGCCGCCACAATCTCCGACCAAGCTAGCAGTCA AACTCCCGCCATATGGGATCGACTTAGAAATGATGCAGCCTGACGCGCCGCCGGCAACTGATCCGAAGGAAAACGACCATCAGAAGCCGTCGCCGGCGAA CAACTACCCCAGGGCTGAGGGCCAGAATTCAGGCAACTTTATCACTGATCGGCCGTCGACCAAAGTGAAGTCAGTTCCGGGAGGAGATTCTTCGCTGGGA TACTTGTTTGGGGATGATTAA
AA sequence Show only first row Show all	>Lus10032297 pacid=23168565 polypeptide=Lus10032297 locus=Lus10032297.g ID=Lus10032297.BGIv1.0 annot-version=v1.0 MSRGGSYGGGQSSLGYLFGSGEPPPQSPTKLAVKLPPYGIDLEMMQPDAPPATDPKENDHQKPSPANNYPRAEGQNSGNFITDRPSTKVKSVPGGDSSLG YLFGDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	0	1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	1.0	0.8870
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	3.5	0.8639
AT1G71110			unknown protein		Lus10007962 [exp]	5.3	0.8279
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	6.0	0.8207
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	6.9	0.8531
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	8.4	0.8158
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	9.8	0.8538
AT5G43150			unknown protein		Lus10010543 [exp]	13.9	0.8280
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	15.0	0.8219
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	16.1	0.7990

Compare expression of checked genes

Lus10032297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.