Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63980 197 / 4e-60 D111/G-patch domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024674 [exp] 483 / 2e-171 AT1G63980 352 / 3e-119 D111/G-patch domain-containing protein (.1.2) Lus10017524 [exp] 305 / 9e-102 AT1G63980 361 / 5e-123 D111/G-patch domain-containing protein (.1.2) Lus10024672 [exp] 45 / 1e-05 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132600 [exp] 265 / 8e-86 AT1G63980 328 / 9e-110 D111/G-patch domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032300 pacid=23168658 polypeptide=Lus10032300 locus=Lus10032300.g ID=Lus10032300.BGIv1.0 annot-version=v1.0 ATGTGTGCAGAAAAAGTGCTGAGAACCAACATCCACGACGAGAAAGTGAAGCGGAAGGCAATGGAGGCTGTTTCAACCCTTATAGCTATCGAGGAAGATA CGGAACTAGATAAACAGGATGTTAAGGCTGTGTCTAAAGAGGTTCAAGTACCGGTTGCTAAGGTTACTCGACCGCAAGGAAGATATCAGAAAAGGGAGAG GGGGAAGCGTGTCAATGGTTATTCGATGAAGGATTTGGAAGGGATTCTTGTTAGAAAGACCGAGGAGCTACCTCAGGCTGATCATAATGAATTGGACTCT CTGGAAGAAGAAGAAGAAGCAGCCCAAGTTTATAACCCGTCAGGAAACAAAGTTGAAGAGCTTTCTCCGGACTGGTGGGGCCACAAATTCGGATTCGTCT CTGGTGGTCTACTTGGAGCTCGTTCGACGAAGAAGAAATCAACAAAAAAGGGAGATGCTCAAAATCCTAAAGAGAGGACTGCCTTTTTTGAACAAGATCA AGAGGATCTTTACAATCTTGTTCAAGATAATGCCACATCCGGCAAGCAAGGACTAGGTATTAAGAGTCGGCCCAAGAAAATCGGAGGTGCTCGTTTTGAG GGGAAAAAGAAATCCTTTTCTGACAGCGAGAACGATGATTCTGCTGAGGAGGATTCCGCATCAGAGCAGCAGTCTAATGTTGCTGAAGAAATGGAGACCA TCGATGATAACGAATCTACTAAACCAGATCAGTCCTCCAGGAAAAGGAAATATGATGACGATCAATCAGGTGACGATGGGGAAGTGCAAAAGGTTAATCT GAAGAAGCTGTCTAAAAGGCTTCTGCAGAAGGCGTCTGGAGAATCGCTCGAGCTGAAAAAGCTCAAGGTTCTTATAGAGGAACACTCAGCCTCTGTTTTC TCAAACTTCTCTTCGAAAAGAGATGCTCTTGCTTACTTGAAGCAAAAGTTGGAAGGCAGTGGGAAATTTGCAGTGGAGGGGAAGAAAGTAAGCCTTGCTT CCAGAAGAAGCTGA
AA sequence Show only first row Show all	>Lus10032300 pacid=23168658 polypeptide=Lus10032300 locus=Lus10032300.g ID=Lus10032300.BGIv1.0 annot-version=v1.0 MCAEKVLRTNIHDEKVKRKAMEAVSTLIAIEEDTELDKQDVKAVSKEVQVPVAKVTRPQGRYQKRERGKRVNGYSMKDLEGILVRKTEELPQADHNELDS LEEEEEAAQVYNPSGNKVEELSPDWWGHKFGFVSGGLLGARSTKKKSTKKGDAQNPKERTAFFEQDQEDLYNLVQDNATSGKQGLGIKSRPKKIGGARFE GKKKSFSDSENDDSAEEDSASEQQSNVAEEMETIDDNESTKPDQSSRKRKYDDDQSGDDGEVQKVNLKKLSKRLLQKASGESLELKKLKVLIEEHSASVF SNFSSKRDALAYLKQKLEGSGKFAVEGKKVSLASRRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63980			D111/G-patch domain-containing...		Lus10032300 [exp]	0	1
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	7.9	0.8845
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	13.3	0.8184
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	15.1	0.8704
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10011773 [exp]	21.4	0.8583
AT1G71430			unknown protein		Lus10040114 [exp]	22.3	0.7948
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	23.1	0.8679
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	25.7	0.8560
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	36.0	0.8523
AT4G14320			Zinc-binding ribosomal protein...		Lus10000176 [exp]	40.5	0.8537
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	41.9	0.8552

Compare expression of checked genes

Lus10032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.