Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63990 229 / 2e-74 SPO11-2 sporulation 11-2 (.1) AT5G02820 96 / 3e-23 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT3G13170 69 / 1e-13 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024675 [exp] 263 / 4e-90 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10003996 [exp] 97 / 1e-23 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10015052 [exp] 62 / 2e-11 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10004416 [exp] 48 / 1e-06 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10016612 [exp] 40 / 0.001 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099100 [exp] 254 / 3e-84 AT1G63990 603 / 0.0 sporulation 11-2 (.1) Potri.006G132600 [exp] 96 / 2e-23 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G366700 [exp] 76 / 2e-16 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032302 pacid=23168668 polypeptide=Lus10032302 locus=Lus10032302.g ID=Lus10032302.BGIv1.0 annot-version=v1.0 ATGGAGCACGAAATCGACGAAGAGCTCGACCTCTGCAAATCATCAATGGCATTCTTCTCCGTTCAGCAGCTCTGCTACGCCGATATCCTACCAGCTCATG AGGAGCCAGACAAGGAGACTGTGGATTGTTCTGAATGCGGATCATCCGGGTATGCTATTTCTGGGGACTTGGACTTGCTGGACAGATTGACTATGAGAAC AGATGCACGATACATTATAGTAGTGGAAAAGCATGCGATTTTCCAAAGATTAGCTGAGGATCGTATATTCAATCACATTCCAAGCATTCTCATTACAGCA AAAGGGTACCCAGATATAGCCACTAGGTGCGTTTCTTCAGCATGCAATGTGAGATGGTTAGGAGTTCGCGGAGATGATCTACAACTCATACCTGAAGAAT CCCTCGTGCCATTGAAGCCACAGGACGTCCAGATAGCTAAAAGTTTGATGTCTTCAGAAATAATGCAGGAAAAATACAAAGAAGAATTGGAGCAAATGGT TCAGACCGGGAAGAAAGCAGAAATTGAAGCACTGTTCTATCATGGCTATGATTTCCTCGGAAAGTACATCGCCAAGAAGATTGTACAAGCCAACTACATC TAG
AA sequence Show only first row Show all	>Lus10032302 pacid=23168668 polypeptide=Lus10032302 locus=Lus10032302.g ID=Lus10032302.BGIv1.0 annot-version=v1.0 MEHEIDEELDLCKSSMAFFSVQQLCYADILPAHEEPDKETVDCSECGSSGYAISGDLDLLDRLTMRTDARYIIVVEKHAIFQRLAEDRIFNHIPSILITA KGYPDIATRCVSSACNVRWLGVRGDDLQLIPEESLVPLKPQDVQIAKSLMSSEIMQEKYKEELEQMVQTGKKAEIEALFYHGYDFLGKYIAKKIVQANYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10032302 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009400 [exp]	1.0	0.9927
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	2.0	0.9801
					Lus10040397 [exp]	7.5	0.9751
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	8.7	0.9751
					Lus10006918 [exp]	9.7	0.9751
					Lus10007508 [exp]	10.7	0.9751
					Lus10027066 [exp]	11.5	0.9751
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	12.3	0.9751
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	13.1	0.9751
AT1G04670			unknown protein		Lus10004041 [exp]	13.8	0.9751

Compare expression of checked genes

Lus10032302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.