Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52830 124 / 5e-33 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G23550 118 / 3e-31 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT4G01250 114 / 2e-29 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT2G34830 97 / 2e-22 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 96 / 4e-22 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT5G45050 93 / 9e-21 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G29280 84 / 1e-18 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 82 / 5e-18 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G23320 78 / 2e-16 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G24240 78 / 4e-16 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024676 [exp] 312 / 5e-107 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10039295 [exp] 122 / 2e-32 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 121 / 3e-31 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10007907 [exp] 117 / 3e-30 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 107 / 2e-27 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 100 / 2e-24 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 96 / 6e-22 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 78 / 5e-17 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10026936 [exp] 79 / 2e-16 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132700 [exp] 142 / 4e-40 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.001G099001 [exp] 137 / 2e-38 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.004G072000 [exp] 123 / 4e-32 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.017G149000 [exp] 119 / 7e-31 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.002G164400 [exp] 115 / 8e-30 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 114 / 3e-29 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.011G157100 [exp] 102 / 2e-24 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 101 / 3e-24 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 79 / 4e-17 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 78 / 1e-16 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10032303 pacid=23168539 polypeptide=Lus10032303 locus=Lus10032303.g ID=Lus10032303.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGGATCTTGACGCCGTTGTCAGAGGCTGTAACAGCAGCAACGTCCCTTTAATTCCAAATCCTTCTTCTTCTTCTTCTTCTTCTTGTCCGA TGGAGTTGGAGTTTCCAGTTACTAGTACTGGGTTCTGCTTCGAGGAGTATGATGACCAGTTGTTTGATGCTGATTTGGATGGGTTGCTTGAAGGGCTTTA CAAGCCCTTTTGCAATTACCAACAGCCGTCAAGTACTCTTCTCACCTCAGATCCGCCGCCGCCAGATCAGCTCCCCGCCGGTGTCGTGGTGGGGCCTGAT TTATCAGCCTCTTCTTCTGCTACTAGTAGCGTGGAGCAAAGTAATCCTGTAGTCAAGTTGAGGAAAAGGAAGAACCAGCAGAAAAGAGTGGTAGAGCACG TAACAGAAGAAGCGATATGTTCAGACAAATGGGCCTGGCGAAAATACGGGCAGAAGCCCATAAAGGGATCCCCATACCCGAGGAGCTACTACAGGTGCAG CAGCTTGAAAGGCTGCCCAGCTAGGAAACAAGTCGAGAGGAGCACTTCCGACAATTCCATCTTCATAATCACCTACACTGCTGACCACACCCACGCGCTC CCCACTCGCCGAAACTCACTCGCCGGCACCACCCGCATCAAGGCGGCGGCTCCTCCTGCTCCACCCACCTCAGACGAGCATCATTCTCTCGACAAGACGC TCTCCGTCGGCTCTTCTAGTAATAATATCGAAGAGGATCTTTCTCACGAGGTGCTTGTCAAGGTTGAGGAGGAGCTTCAGAGTAATAACGTCGATGACTT CTTTTCCACGACGTCGGATGTGGTTTTTAGCGACGATTTGTTTCCCGGCGGCTTGGGGGACTTGGATGGCATGTTTCTGAATCGATGGTAG
AA sequence Show only first row Show all	>Lus10032303 pacid=23168539 polypeptide=Lus10032303 locus=Lus10032303.g ID=Lus10032303.BGIv1.0 annot-version=v1.0 MADWDLDAVVRGCNSSNVPLIPNPSSSSSSSCPMELEFPVTSTGFCFEEYDDQLFDADLDGLLEGLYKPFCNYQQPSSTLLTSDPPPPDQLPAGVVVGPD LSASSSATSSVEQSNPVVKLRKRKNQQKRVVEHVTEEAICSDKWAWRKYGQKPIKGSPYPRSYYRCSSLKGCPARKQVERSTSDNSIFIITYTADHTHAL PTRRNSLAGTTRIKAAAPPAPPTSDEHHSLDKTLSVGSSSNNIEEDLSHEVLVKVEEELQSNNVDDFFSTTSDVVFSDDLFPGGLGDLDGMFLNRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	3.7	0.9736
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	4.2	0.9701
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	4.5	0.9670
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	4.7	0.9547
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	4.9	0.9627
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	5.2	0.9685
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	7.1	0.9517
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	11.5	0.9684
AT4G14746			unknown protein		Lus10039368 [exp]	14.1	0.9509
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	16.7	0.9454

Compare expression of checked genes

Lus10032303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.