Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 160 / 1e-45 O-methyltransferase family protein (.1) AT4G35150 128 / 5e-34 O-methyltransferase family protein (.1) AT5G54160 125 / 1e-32 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 110 / 4e-27 O-methyltransferase family protein (.1.2) AT3G53140 108 / 8e-27 O-methyltransferase family protein (.1) AT1G63140 95 / 1e-21 O-methyltransferase family protein (.1.2) AT1G77520 94 / 2e-21 O-methyltransferase family protein (.1) AT5G53810 90 / 6e-20 O-methyltransferase family protein (.1) AT1G77530 89 / 1e-19 O-methyltransferase family protein (.1) AT1G76790 86 / 2e-18 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038331 [exp] 423 / 9e-146 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10006692 [exp] 363 / 7e-125 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10006691 [exp] 363 / 1e-124 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10007035 [exp] 330 / 4e-112 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10024678 [exp] 294 / 1e-98 AT4G35160 64 / 2e-11 O-methyltransferase family protein (.1) Lus10033656 [exp] 278 / 1e-91 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10018628 [exp] 275 / 5e-90 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017699 [exp] 272 / 6e-89 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018629 [exp] 263 / 2e-85 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 284 / 5e-94 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 283 / 1e-93 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 282 / 4e-93 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 280 / 2e-92 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 280 / 3e-92 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 278 / 2e-91 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 270 / 2e-88 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 259 / 2e-84 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 246 / 3e-79 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 238 / 6e-76 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10032304 pacid=23168530 polypeptide=Lus10032304 locus=Lus10032304.g ID=Lus10032304.BGIv1.0 annot-version=v1.0 ATGGATGGAGAGAGAGCAATTGAGCTAATGGAGGCAGAAACTCAAGTTTGGAATCACGGCACAGGATACATAAAGTCGATGACTGTCCAATGTGCAATCG AGCTTGGAATTCCAGACGTTGTCCACAGCCACGGAAGTCCAATGGCACTGGTTGACCTGGCCAACCGTCTCGGAATCCCTGAGGAAAAAGCTCCTTTCCT CGGCCGCCTCATGCGTATGCTCGTCCACTTGGGCTACTTCAAAGAAGAAGAAGGTAACTACAGCTTGAACCCACTATGCGATTTCCTCGTGAAGAAGAAC CCTTTCAACACAACCTCACTAGTCCTCTTCCTCAACCACCCAATGCTAGTCGAACCATGGCGGCACATGAGTGCATGGTTGCGAACTAGTAGTACTAGTA ATCCTTTCGCATTCGCCAACGGCGGGAAGAAGATGTACCAAGTGGCGGCAGAAAACCCTCAGGGGTTTGGGAAACTGCTGAACGAAGCCATGGGAGGTGA CAGCTGGCTCTTCGGCAAGGTGTTGGTGTCCAAATGCAAAGCTGCTTTTGAGGGGTTGGCTTCGGTTGTGGATGTGGGTGGAAGCACTGGTGTAACTGCT AAGGCTATCGCTGAGGCTTTCCCGAACGTCAAATGTACTGTGTTTGATCTTCCACACGTCATCCAACAAAAAGATGACGACGGAGAAGGAGAAGATGGTC AATTTGGTAATCTTGACTATATTGGCGGCGATATGTTCGACCAAATTCCTTCCGCTGATGCAGTCCTCTTAAAGTGGGTGCTGATTGACTGGGGGGATGA AGCGTGCTTGCAAATACTGAAAGGATGCAAGAAAGCGGCGAGGAAGAAGGTGATGATCGTCGACCACGTGCTGGGTCACGAGAGTTACAGTGAGGGTTCC TCCACAGAAACATTGTTGATGGTTGATTTGGCAGATATGGCTGCAATTGATGGTGTTATAAGAACCGAACAAGAGTGGGCTAAGCTCTTTGATCAAGCTG GCTTCTCCTCTTACACCATAACCCCCGTCCATGGCTACCGCACTTTCATCCAAGTCTTTCCTTGA
AA sequence Show only first row Show all	>Lus10032304 pacid=23168530 polypeptide=Lus10032304 locus=Lus10032304.g ID=Lus10032304.BGIv1.0 annot-version=v1.0 MDGERAIELMEAETQVWNHGTGYIKSMTVQCAIELGIPDVVHSHGSPMALVDLANRLGIPEEKAPFLGRLMRMLVHLGYFKEEEGNYSLNPLCDFLVKKN PFNTTSLVLFLNHPMLVEPWRHMSAWLRTSSTSNPFAFANGGKKMYQVAAENPQGFGKLLNEAMGGDSWLFGKVLVSKCKAAFEGLASVVDVGGSTGVTA KAIAEAFPNVKCTVFDLPHVIQQKDDDGEGEDGQFGNLDYIGGDMFDQIPSADAVLLKWVLIDWGDEACLQILKGCKKAARKKVMIVDHVLGHESYSEGS STETLLMVDLADMAAIDGVIRTEQEWAKLFDQAGFSSYTITPVHGYRTFIQVFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	0	1
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	4.2	0.7248
AT1G32730			unknown protein		Lus10000258 [exp]	4.8	0.7702
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	7.1	0.7664
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10008656 [exp]	8.0	0.7241
					Lus10010582 [exp]	12.7	0.6872
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	13.5	0.6388
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	14.1	0.6667
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10026807 [exp]	14.4	0.6746
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	15.0	0.6964
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	15.0	0.6685

Compare expression of checked genes

Lus10032304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.